GS_00GTHTT.1

Display Name: Canada/GS_00GTHTT.1/2025-12-15
F. Maguire, N. Waglechner, P. Aftanas, K. Katz, R. Kozak, H. Li, X. Li, C. Vermeiren, E. Xiong & S. Mubareka

Submission details

Submission ID
PX841778.1.seg1/PX841779.1.seg2/PX841780.1.seg4/PX841781.1.seg5/PX841782.1.seg6/PX841783.1.seg7/PX841784.1.seg8
Submitting group
Date submitted
2026-01-15 04:23:10 UTC
Date released
2026-01-15 04:24:05 UTC

Authors

Author affiliations
Shared Hospital Laboratory, Microbiology

INSDC

Bioproject accession
INSDC accession seg1
INSDC accession seg2
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-01-13

Clade

Clade HA
6B.1A.5a.2a.1
Clade NA
D.1

Alignment states and QC metrics seg1

Completeness seg1
49.96%
Length seg1
2326
Total ambiguous nucs seg1
0
Total deleted nucs seg1
15
Total frame shifts seg1
0
Total inserted nucs seg1
61
Total SNPs seg1
48
Total unknown nucs seg1
1141

Alignment states and QC metrics seg2

Completeness seg2
54.66%
Length seg2
2316
Total ambiguous nucs seg2
0
Total deleted nucs seg2
0
Total frame shifts seg2
0
Total inserted nucs seg2
42
Total SNPs seg2
43
Total unknown nucs seg2
1031

Alignment states and QC metrics seg4

Completeness seg4
74.94%
Length seg4
1383
Total ambiguous nucs seg4
0
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
84
Total unknown nucs seg4
70

Alignment states and QC metrics seg5

Completeness seg5
99.73%
Length seg5
1528
Total ambiguous nucs seg5
0
Total deleted nucs seg5
0
Total frame shifts seg5
0
Total inserted nucs seg5
35
Total SNPs seg5
65
Total unknown nucs seg5
0

Alignment states and QC metrics seg6

Completeness seg6
100.00%
Length seg6
1433
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
23
Total unknown nucs seg6
0

Alignment states and QC metrics seg7

Completeness seg7
100.00%
Length seg7
1027
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
45
Total SNPs seg7
29
Total unknown nucs seg7
0

Alignment states and QC metrics seg8

Completeness seg8
100.00%
Length seg8
890
Total ambiguous nucs seg8
0
Total deleted nucs seg8
0
Total frame shifts seg8
0
Total inserted nucs seg8
27
Total SNPs seg8
33
Total unknown nucs seg8
0

Sample details

Collection country
Canada
Collection subdivision level 1
Toronto
Collection date
2025-12-15
Isolate name
A/Toronto/ON-SHL-FLUA-2025-00393/2025

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC seg4

Subtype seg4
H1

INSDC seg6

Subtype seg6
N1

Nucleotide mutations

Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

seg1

  • seg1:A18G
  • seg1:G66A
  • seg1:A90C
  • seg1:A96G
  • seg1:A108G
  • seg1:A132G
  • seg1:A138G
  • seg1:G161A
  • seg1:A174G
  • seg1:T201C
  • seg1:A225G
  • seg1:A226T
  • seg1:C242T
  • seg1:C261T
  • seg1:C285A
  • seg1:A291G
  • seg1:C309T
  • seg1:G363A

    • seg2

  • seg2:G42A
  • seg2:A159G
  • seg2:G168A
  • seg2:G180A
  • seg2:C192T
  • seg2:G195A
  • seg2:T207A
  • seg2:T210C
  • seg2:T222C
  • seg2:G225A
  • seg2:C297T
  • seg2:G312A
  • seg2:T324A
  • seg2:G354A
  • seg2:T360C
  • seg2:A366G
  • seg2:G1413A
  • seg2:C1656A

    • seg4

  • seg4:G416A
  • seg4:C443T
  • seg4:T485C
  • seg4:A496G
  • seg4:T512C
  • seg4:A515G
  • seg4:A524G
  • seg4:T539A
  • seg4:A599G
  • seg4:T618C
  • seg4:T620C
  • seg4:G625T
  • seg4:G627A
  • seg4:C636G
  • seg4:A662G
  • seg4:T678A
  • seg4:A717G
  • seg4:T718C

    • seg5

  • seg5:A33G
  • seg5:G42T
  • seg5:C87T
  • seg5:A97G
  • seg5:C141A
  • seg5:C171T
  • seg5:T177C
  • seg5:C180T
  • seg5:C249A
  • seg5:A288C
  • seg5:G298A
  • seg5:C303T
  • seg5:G309A
  • seg5:T314C
  • seg5:G315A
  • seg5:R341A
  • seg5:T365A
  • seg5:A390G

    • seg6

  • seg6:C64T
  • seg6:G108A
  • seg6:C185T
  • seg6:C301T
  • seg6:C452A
  • seg6:G607A
  • seg6:C656T
  • seg6:A785G
  • seg6:T799C
  • seg6:A818G
  • seg6:G881A
  • seg6:C893T
  • seg6:G905A
  • seg6:G914T
  • seg6:A1049G
  • seg6:C1187T
  • seg6:A1193G
  • seg6:A1208G

    • seg7

  • seg7:G75A
  • seg7:C124A
  • seg7:G238A
  • seg7:G258A
  • seg7:A293G
  • seg7:G306A
  • seg7:G339A
  • seg7:G342A
  • seg7:C375A
  • seg7:G402A
  • seg7:T432C
  • seg7:T435C
  • seg7:G441T
  • seg7:T477C
  • seg7:G492A
  • seg7:C507A
  • seg7:A574G
  • seg7:C622A

    • seg8

  • seg8:C6A
  • seg8:C42T
  • seg8:C54T
  • seg8:T99C
  • seg8:C108A
  • seg8:T159C
  • seg8:G163A
  • seg8:C192T
  • seg8:C204T
  • seg8:G213T
  • seg8:A238G
  • seg8:G250A
  • seg8:C264T
  • seg8:C268A
  • seg8:C315T
  • seg8:A367G
  • seg8:A375T
  • seg8:A391G
    • Deletions
    seg1:244-258
    Insertions
    ins_seg1:0:AGCAAAAGCAGGTCAAATATATTCAAT, ins_seg1:2280:TGTCGAATTGTTTAAAAACGACCTTGTTTCTACT, ins_seg2:0:CAAACCATTTGA, ins_seg2:2274:TGAATTTAACTTGTCCTTCATGAAAAAATG, ins_seg5:0:GGGTAGATAATCACTCAATGAGTGACATCGAAGCC, ins_seg7:0:AGCAAAAGCAGGTAGATGTTTAAAG, ins_seg7:982:AAAACTACCTTGTTTCTACT, ins_seg8:0:AGCAAAAGCAGGGTGACAAAAACATA, ins_seg8:863:T

    Amino acid mutations

    Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

    Substitutions

    HA1

  • HA1:K142R
  • HA1:N156K
  • HA1:S183P
  • HA1:S185I
  • HA1:A186T
  • HA1:Q189E
  • HA1:S203T
  • HA1:I216A
  • HA1:R223Q
  • HA1:E224A
  • HA1:V250A
  • HA1:A256T
  • HA1:R259K
  • HA1:N260E
  • HA1:T277A
  • HA1:K283E
  • HA1:I295V
  • HA1:K308R
  • HA1:I321V

    • HA2

  • HA2:E29D
  • HA2:I45V
  • HA2:E47K
  • HA2:I91V
  • HA2:S124H
  • HA2:I133T
  • HA2:E172K
  • HA2:E179D
  • HA2:V193A

    • M1

  • M1:L42I
  • M1:V80I
  • M1:K98R
  • M1:M192V
  • M1:Q208K
  • M1:K230R

    • M2

  • M2:D21G
  • M2:S23N

    • NA

  • NA:T19M
  • NA:V34I
  • NA:A98V
  • NA:S200N
  • NA:I264T
  • NA:V453M
  • NA:K469N

    • NEP

  • NEP:D2E
  • NEP:N29S
  • NEP:T48A
  • NEP:M83I

    • NP

  • NP:E14D
  • NP:I33V
  • NP:V100I
  • NP:M105T
  • NP:X114E
  • NP:L122Q
  • NP:I136L
  • NP:V217I
  • NP:V425I

    • NS1

  • NS1:D2E
  • NS1:E55K
  • NS1:E71D
  • NS1:T80A
  • NS1:V84I
  • NS1:L90I
  • NS1:I123V
  • NS1:E125D
  • NS1:K131E
  • NS1:A155T
  • NS1:N205S

    • PB1

  • PB1:D729E
  • PB1:K757R

    • PB2

  • PB2:R54K
  • PB2:T76S
  • PB2:S86I
  • PB2:I559M
  • PB2:V667I
  • PB2:V731I
    • Deletions
    PB2:81-85
    Insertions
    None