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GS_00GS78A.1
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Download metadata TSV
Display Name: Slovakia/GS_00GS78A.1/2025-12-01
T. Sladecek
Submission details
Submission ID
OZ389755.1.seg1/OZ389754.1.seg2/OZ389758.1.seg3/OZ389752.1.seg4/OZ389756.1.seg5/OZ389753.1.seg6/OZ389757.1.seg7
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-01-11 04:34:57 UTC
Date released
2026-01-11 04:35:58 UTC
Authors
Author affiliations
Science Park of Comenius University of Bratislava, Ilkovicova 8, 841 04 Bratislava
INSDC
Bioproject accession
PRJEB72255
Biosample accession
SAMEA120913396
INSDC accession seg1
OZ389755.1
INSDC accession seg2
OZ389754.1
INSDC accession seg3
OZ389758.1
INSDC accession seg4
OZ389752.1
INSDC accession seg5
OZ389756.1
INSDC accession seg6
OZ389753.1
INSDC accession seg7
OZ389757.1
NCBI release date
2026-01-09
Clade
Clade HA
3C.2a1b.2a.2a.3a.1
Clade NA
B.4.2
Alignment states and QC metrics seg1
Completeness seg1
92.61%
Length seg1
2168
Total ambiguous nucs seg1
0
Total deleted nucs seg1
0
Total frame shifts seg1
0
Total inserted nucs seg1
0
Total SNPs seg1
97
Total unknown nucs seg1
0
Alignment states and QC metrics seg2
Completeness seg2
79.71%
Length seg2
2171
Total ambiguous nucs seg2
0
Total deleted nucs seg2
0
Total frame shifts seg2
0
Total inserted nucs seg2
0
Total SNPs seg2
90
Total unknown nucs seg2
305
Alignment states and QC metrics seg3
Completeness seg3
92.12%
Length seg3
2057
Total ambiguous nucs seg3
0
Total deleted nucs seg3
0
Total frame shifts seg3
0
Total inserted nucs seg3
0
Total SNPs seg3
86
Total unknown nucs seg3
0
Alignment states and QC metrics seg4
Completeness seg4
91.02%
Length seg4
1581
Total ambiguous nucs seg4
0
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
115
Total unknown nucs seg4
0
Alignment states and QC metrics seg5
Completeness seg5
90.61%
Length seg5
1419
Total ambiguous nucs seg5
0
Total deleted nucs seg5
0
Total frame shifts seg5
0
Total inserted nucs seg5
0
Total SNPs seg5
52
Total unknown nucs seg5
0
Alignment states and QC metrics seg6
Completeness seg6
91.23%
Length seg6
1310
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
71
Total unknown nucs seg6
0
Alignment states and QC metrics seg7
Completeness seg7
86.27%
Length seg7
886
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
0
Total SNPs seg7
24
Total unknown nucs seg7
0
Sample details
Collection country
Slovakia
Collection date
2025-12-01
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC seg4
Subtype seg4
H3
INSDC seg6
Subtype seg6
N2
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg1
seg1:
C
192
T
seg1:
C
198
T
seg1:
T
255
C
seg1:
A
282
G
seg1:
C
289
A
seg1:
A
336
G
seg1:
G
343
A
seg1:
G
347
A
seg1:
A
369
G
seg1:
G
375
A
seg1:
A
402
G
seg1:
T
417
C
seg1:
T
426
C
seg1:
T
438
C
seg1:
G
447
A
seg1:
C
453
T
seg1:
T
467
C
seg1:
A
504
G
Show more
seg2
seg2:
A
129
G
seg2:
A
132
T
seg2:
A
135
G
seg2:
C
141
T
seg2:
T
171
C
seg2:
A
179
G
seg2:
G
180
A
seg2:
A
213
T
seg2:
A
219
G
seg2:
G
258
A
seg2:
C
282
T
seg2:
A
600
G
seg2:
T
675
C
seg2:
T
688
C
seg2:
A
711
G
seg2:
T
726
C
seg2:
G
774
A
seg2:
C
783
T
Show more
seg3
seg3:
A
120
C
seg3:
C
144
T
seg3:
A
156
G
seg3:
T
174
C
seg3:
T
177
C
seg3:
G
210
A
seg3:
T
222
C
seg3:
G
243
A
seg3:
A
324
T
seg3:
A
333
G
seg3:
C
340
T
seg3:
A
342
G
seg3:
A
345
G
seg3:
G
363
A
seg3:
T
369
C
seg3:
A
396
G
seg3:
A
435
G
seg3:
C
450
A
Show more
seg4
seg4:
G
155
A
seg4:
A
163
G
seg4:
C
189
T
seg4:
G
199
A
seg4:
C
203
A
seg4:
C
208
T
seg4:
G
213
A
seg4:
G
214
A
seg4:
G
222
A
seg4:
A
235
G
seg4:
A
250
G
seg4:
A
251
G
seg4:
A
281
G
seg4:
T
296
C
seg4:
C
302
T
seg4:
A
305
G
seg4:
A
312
G
seg4:
C
335
A
Show more
seg5
seg5:
T
180
G
seg5:
G
207
A
seg5:
G
219
A
seg5:
G
237
A
seg5:
C
249
T
seg5:
A
351
G
seg5:
G
390
A
seg5:
G
432
T
seg5:
G
436
T
seg5:
T
447
C
seg5:
A
451
C
seg5:
C
459
T
seg5:
G
492
A
seg5:
A
513
G
seg5:
T
525
C
seg5:
A
582
C
seg5:
C
603
T
seg5:
G
606
A
Show more
seg6
seg6:
C
144
T
seg6:
A
189
G
seg6:
C
205
T
seg6:
T
245
C
seg6:
G
270
A
seg6:
A
280
G
seg6:
A
281
G
seg6:
T
303
C
seg6:
C
345
A
seg6:
C
380
T
seg6:
G
408
A
seg6:
C
429
T
seg6:
G
442
A
seg6:
G
459
A
seg6:
C
474
T
seg6:
A
492
G
seg6:
A
501
T
seg6:
T
504
C
Show more
seg7
seg7:
C
188
T
seg7:
G
205
A
seg7:
G
214
T
seg7:
A
241
G
seg7:
T
292
C
seg7:
T
298
C
seg7:
A
466
G
seg7:
A
481
G
seg7:
C
493
T
seg7:
A
517
G
seg7:
G
523
A
seg7:
G
619
A
seg7:
A
637
G
seg7:
A
658
G
seg7:
G
680
A
seg7:
C
697
T
seg7:
T
703
C
seg7:
C
787
T
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
K
HA1:
D
53
N
HA1:
Q
57
R
HA1:
E
62
G
HA1:
K
83
E
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
96
S
HA1:
N
121
K
HA1:
T
131
K
HA1:
T
135
K
HA1:
S
138
A
HA1:
R
142
G
HA1:
N
145
S
HA1:
H
156
S
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
I
77
V
HA2:
R
121
K
HA2:
G
155
E
HA2:
D
160
N
HA2:
I
193
M
HA2:
V
200
I
M1
M1:
V
219
I
M2
M2:
P
25
L
M2:
S
31
N
M2:
L
54
F
M2:
N
82
S
NA
NA:
I
62
M
NA:
L
81
P
NA:
N
93
G
NA:
P
126
L
NA:
D
147
N
NA:
V
194
I
NA:
I
215
V
NA:
K
220
N
NA:
E
221
D
NA:
S
245
N
NA:
S
247
T
NA:
H
264
N
NA:
T
267
K
NA:
L
285
P
NA:
V
303
I
NA:
Y
310
H
NA:
S
315
R
NA:
N
329
S
Show more
NP
NP:
A
131
S
NP:
I
136
L
NP:
V
197
I
NP:
R
236
K
NP:
T
472
A
PA
PA:
N
142
K
PA:
I
155
M
PA:
K
158
R
PA:
S
208
T
PA:
K
222
N
PA:
K
256
Q
PA:
N
272
S
PA:
I
311
M
PA:
Y
321
C
PA:
D
382
E
PA:
D
396
E
PA:
N
409
S
PA:
I
421
V
PA:
Y
437
H
PA:
I
602
V
PA:
K
605
R
PA:
V
668
I
PA:
N
675
K
PA-X
PA-X:
N
142
K
PA-X:
I
155
M
PA-X:
K
158
R
PA-X:
E
209
G
PA-X:
V
212
A
PA-X:
N
222
T
PB1
PB1:
K
52
R
PB1:
R
386
K
PB1:
V
423
I
PB1:
L
576
I
PB1:
R
586
K
PB1:
A
587
T
PB1:
E
618
D
PB1:
V
645
I
PB1:
N
667
I
PB1-F2
PB1-F2:
E
4
G
PB1-F2:
Q
5
L
PB1-F2:
D
6
G
PB1-F2:
P
8
L
PB1-F2:
I
18
T
PB1-F2:
R
21
E
PB1-F2:
H
32
L
PB1-F2:
N
34
S
PB1-F2:
S
47
N
PB1-F2:
T
55
I
PB2
PB2:
A
106
T
PB2:
S
107
N
PB2:
I
147
T
PB2:
E
249
G
PB2:
K
340
R
PB2:
E
341
D
PB2:
K
353
R
PB2:
I
394
V
PB2:
I
451
V
PB2:
T
491
I
PB2:
V
560
I
PB2:
I
588
T
PB2:
T
613
A
Deletions
None
Insertions
None
Load sequences