GenSpectrum
Organisms
Influenza A/H1N1pdm
GenSpectrum
Organisms
Influenza B/Victoria
Dengue 1
Dengue 2
Dengue 3
Dengue 4
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
Docs
API docs
Influenza A/H1N1pdm
|
Browse data
Select organism section
Browse data
GS_00GS67D.1
Download
Download FASTA
Download metadata TSV
Display Name: Slovakia/GS_00GS67D.1/2025-12-09
T. Sladecek
Submission details
Submission ID
OZ389637.1.seg1/OZ389636.1.seg2/OZ389632.1.seg3/OZ389630.1.seg4/OZ389634.1.seg5/OZ389631.1.seg6/OZ389633.1.seg7/OZ389635.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-01-11 04:18:14 UTC
Date released
2026-01-11 04:19:15 UTC
Authors
Author affiliations
Science Park of Comenius University of Bratislava, Ilkovicova 8, 841 04 Bratislava
INSDC
Bioproject accession
PRJEB72255
Biosample accession
SAMEA120913395
INSDC accession seg1
OZ389637.1
INSDC accession seg2
OZ389636.1
INSDC accession seg3
OZ389632.1
INSDC accession seg4
OZ389630.1
INSDC accession seg5
OZ389634.1
INSDC accession seg6
OZ389631.1
INSDC accession seg7
OZ389633.1
INSDC accession seg8
OZ389635.1
NCBI release date
2026-01-09
Clade
Clade HA
6B.1A.5a.2a.1
Clade NA
D
Alignment states and QC metrics seg1
Completeness seg1
98.82%
Length seg1
2253
Total ambiguous nucs seg1
0
Total deleted nucs seg1
0
Total frame shifts seg1
0
Total inserted nucs seg1
0
Total SNPs seg1
86
Total unknown nucs seg1
0
Alignment states and QC metrics seg2
Completeness seg2
96.92%
Length seg2
2208
Total ambiguous nucs seg2
0
Total deleted nucs seg2
0
Total frame shifts seg2
0
Total inserted nucs seg2
4
Total SNPs seg2
71
Total unknown nucs seg2
0
Alignment states and QC metrics seg3
Completeness seg3
96.61%
Length seg3
2123
Total ambiguous nucs seg3
0
Total deleted nucs seg3
0
Total frame shifts seg3
0
Total inserted nucs seg3
45
Total SNPs seg3
74
Total unknown nucs seg3
0
Alignment states and QC metrics seg4
Completeness seg4
97.37%
Length seg4
1706
Total ambiguous nucs seg4
0
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
110
Total unknown nucs seg4
0
Alignment states and QC metrics seg5
Completeness seg5
99.73%
Length seg5
1526
Total ambiguous nucs seg5
0
Total deleted nucs seg5
0
Total frame shifts seg5
0
Total inserted nucs seg5
33
Total SNPs seg5
60
Total unknown nucs seg5
0
Alignment states and QC metrics seg6
Completeness seg6
96.79%
Length seg6
1387
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
22
Total unknown nucs seg6
0
Alignment states and QC metrics seg7
Completeness seg7
97.56%
Length seg7
958
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
0
Total SNPs seg7
33
Total unknown nucs seg7
0
Alignment states and QC metrics seg8
Completeness seg8
91.89%
Length seg8
803
Total ambiguous nucs seg8
0
Total deleted nucs seg8
0
Total frame shifts seg8
0
Total inserted nucs seg8
10
Total SNPs seg8
34
Total unknown nucs seg8
0
Sample details
Collection country
Slovakia
Collection date
2025-12-09
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC seg4
Subtype seg4
H1
INSDC seg6
Subtype seg6
N1
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg1
seg1:
G
66
A
seg1:
A
90
C
seg1:
A
96
G
seg1:
A
108
G
seg1:
A
132
G
seg1:
A
138
G
seg1:
G
161
A
seg1:
A
174
G
seg1:
T
201
C
seg1:
A
225
G
seg1:
A
226
T
seg1:
C
242
T
seg1:
A
243
G
seg1:
C
261
T
seg1:
C
285
A
seg1:
A
291
G
seg1:
C
309
T
seg1:
G
363
A
Show more
seg2
seg2:
T
81
C
seg2:
A
159
G
seg2:
G
168
A
seg2:
G
180
A
seg2:
C
192
A
seg2:
G
204
A
seg2:
T
207
A
seg2:
T
210
C
seg2:
T
222
C
seg2:
G
225
A
seg2:
C
297
T
seg2:
G
312
A
seg2:
A
345
G
seg2:
A
366
G
seg2:
T
384
C
seg2:
C
447
T
seg2:
T
450
C
seg2:
G
461
A
Show more
seg3
seg3:
T
81
C
seg3:
G
84
C
seg3:
A
88
G
seg3:
C
90
T
seg3:
C
99
T
seg3:
A
114
T
seg3:
C
153
T
seg3:
C
162
T
seg3:
C
165
T
seg3:
G
187
A
seg3:
G
204
A
seg3:
G
298
A
seg3:
G
423
A
seg3:
G
477
A
seg3:
G
498
A
seg3:
G
504
A
seg3:
G
597
A
seg3:
A
612
G
Show more
seg4
seg4:
A
38
G
seg4:
C
42
A
seg4:
A
47
G
seg4:
G
57
A
seg4:
A
119
G
seg4:
G
137
A
seg4:
T
161
C
seg4:
C
164
T
seg4:
G
188
A
seg4:
A
231
C
seg4:
C
281
A
seg4:
C
293
G
seg4:
C
318
T
seg4:
G
322
A
seg4:
G
360
A
seg4:
G
409
A
seg4:
G
416
A
seg4:
A
429
G
Show more
seg5
seg5:
A
33
G
seg5:
G
42
T
seg5:
C
87
T
seg5:
A
97
G
seg5:
C
141
A
seg5:
C
171
T
seg5:
T
177
C
seg5:
C
180
T
seg5:
C
249
A
seg5:
A
288
C
seg5:
G
298
A
seg5:
C
303
T
seg5:
G
309
A
seg5:
T
314
C
seg5:
G
315
A
seg5:
R
341
A
seg5:
T
365
A
seg5:
A
390
G
Show more
seg6
seg6:
C
285
T
seg6:
A
392
G
seg6:
T
413
C
seg6:
C
452
A
seg6:
G
607
A
seg6:
G
659
A
seg6:
C
728
A
seg6:
G
748
A
seg6:
A
785
G
seg6:
T
799
C
seg6:
A
818
G
seg6:
C
893
T
seg6:
G
914
T
seg6:
C
929
T
seg6:
G
950
A
seg6:
T
1016
C
seg6:
A
1049
G
seg6:
C
1187
T
Show more
seg7
seg7:
G
48
A
seg7:
G
75
A
seg7:
A
81
G
seg7:
T
123
C
seg7:
C
124
A
seg7:
G
238
A
seg7:
G
258
A
seg7:
A
293
G
seg7:
G
306
A
seg7:
G
339
A
seg7:
G
342
A
seg7:
C
375
A
seg7:
G
414
A
seg7:
T
432
C
seg7:
G
441
T
seg7:
G
492
A
seg7:
C
507
A
seg7:
A
574
G
Show more
seg8
seg8:
C
6
A
seg8:
C
42
T
seg8:
C
54
T
seg8:
T
99
C
seg8:
C
108
A
seg8:
T
159
C
seg8:
G
163
A
seg8:
C
192
T
seg8:
C
204
T
seg8:
A
226
T
seg8:
A
238
G
seg8:
G
250
A
seg8:
C
264
T
seg8:
C
268
A
seg8:
C
315
T
seg8:
A
367
G
seg8:
A
375
T
seg8:
A
391
G
Show more
Deletions
None
Insertions
ins_seg2:2274:TGAA, ins_seg3:2151:TTGTGGCAATGCTACTATTTGCTATCCATATTGTCCAAAAAAGTA, ins_seg5:0:GTAGATAATCACTCAATGAGTGACATCGAAGCC, ins_seg8:0:CAAAAACATA
Amino acid mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
K
54
Q
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
R
113
K
HA1:
T
120
A
HA1:
N
129
D
HA1:
K
130
N
HA1:
P
137
S
HA1:
A
139
D
HA1:
K
142
R
HA1:
N
156
K
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
HA1:
S
183
P
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
M1
M1:
L
42
I
M1:
V
80
I
M1:
K
98
R
M1:
M
192
V
M1:
Q
208
K
M1:
K
230
R
M2
M2:
R
18
K
M2:
D
21
G
M2:
S
23
N
M2:
I
28
T
NA
NA:
P
93
S
NA:
S
200
N
NA:
S
247
N
NA:
I
264
T
NA:
M
314
I
NA:
V
453
M
NEP
NEP:
D
2
E
NEP:
M
14
T
NEP:
N
29
S
NEP:
T
48
A
NEP:
M
83
I
NP
NP:
E
14
D
NP:
I
33
V
NP:
V
100
I
NP:
M
105
T
NP:
X
114
E
NP:
L
122
Q
NP:
I
136
L
NP:
V
217
I
NP:
V
425
I
NS1
NS1:
D
2
E
NS1:
E
55
K
NS1:
T
76
S
NS1:
T
80
A
NS1:
V
84
I
NS1:
L
90
I
NS1:
I
123
V
NS1:
E
125
D
NS1:
K
131
E
NS1:
A
155
T
NS1:
P
164
S
NS1:
N
205
S
PA
PA:
I
30
V
PA:
V
63
I
PA:
V
100
I
PA:
P
224
S
PA:
S
225
C
PA:
C
241
Y
PA:
R
262
K
PA:
P
320
S
PA:
N
321
K
PA:
I
330
V
PA:
A
337
T
PA:
K
339
N
PA:
R
362
K
PA:
I
438
V
PA:
I
505
V
PA-X
PA-X:
I
30
V
PA-X:
V
63
I
PA-X:
V
100
I
PA-X:
R
199
K
PA-X:
N
204
S
PA-X:
R
206
K
PA-X:
R
221
Q
PA-X:
L
229
S
PB1
PB1:
G
154
D
PB1:
V
200
I
PB1:
K
386
R
PB1:
I
397
M
PB1:
I
435
T
PB1:
K
757
R
PB2
PB2:
R
54
K
PB2:
T
76
S
PB2:
T
81
M
PB2:
K
187
R
PB2:
D
195
N
PB2:
G
225
S
PB2:
R
293
K
PB2:
R
299
K
PB2:
V
344
M
PB2:
I
354
L
PB2:
S
453
T
PB2:
L
475
M
PB2:
I
559
M
PB2:
V
667
I
PB2:
V
731
I
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
None
Insertions
None
Load sequences