GenSpectrum
Organisms
Dengue 3
GenSpectrum
Organisms
Influenza B/Victoria
Dengue 1
Dengue 2
Dengue 3
Dengue 4
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
Docs
API docs
Dengue 3
|
Browse data
Select organism section
Browse data
GS_00GK3FE.1
Download
Download FASTA
Download metadata TSV
Display Name: USA/GS_00GK3FE.1/2025-11-02
E. B. Fox,
J. M. Garrigues &
N. M. Green
Submission details
Submission ID
PX754527.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-12-30 03:58:56 UTC
Date released
2025-12-30 03:59:49 UTC
Authors
Author affiliations
Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories
Clade & Lineage
Clade
3I_A.1
Alignment states and QC metrics
Completeness
98.53%
Length
10551
Total ambiguous nucs
1
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
805
Total unknown nucs
0
Sample details
Collection country
USA
Collection subdivision level 1
California
Collection date
2025-11-02
Isolate name
hDenV3/USA/CA-LACPHL-DA00082/2025
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PX754527.1
NCBI release date
2025-12-28
NCBI update date
2025-12-28
Nucleotide mutations
Mutations called relative to the
NC_001475.2
reference
Substitutions
G
37
A
G
62
A
G
112
A
A
198
G
C
211
T
G
217
A
A
277
G
A
283
G
G
287
A
C
325
T
A
339
G
A
376
T
C
383
A
A
384
G
C
409
A
A
418
G
G
421
A
G
428
A
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_001475.2
reference
Substitutions
2K
2K:
T
20
I
2K:
I
21
V
C
C:
K
35
R
C:
V
65
I
C:
K
82
R
C:
Q
97
R
C:
I
108
M
C:
A
112
T
E
E:
I
68
V
E:
V
81
T
E:
P
124
L
E:
Y
132
H
E:
T
169
V
E:
N
201
D
E:
A
219
T
E:
R
231
K
E:
N
270
T
E:
T
301
S
E:
T
303
A
E:
V
322
I
E:
G
340
E
E:
P
362
L
E:
V
377
I
E:
N
383
K
E:
K
386
R
E:
E
404
A
E:
V
452
I
E:
A
479
V
NS1
NS1:
I
6
V
NS1:
T
93
I
NS1:
L
94
I
NS1:
S
145
N
NS1:
V
174
M
NS1:
T
233
S
NS1:
S
290
N
NS1:
S
339
N
NS2A
NS2A:
L
23
M
NS2A:
F
37
L
NS2A:
F
38
I
NS2A:
H
55
R
NS2A:
V
127
I
NS2A:
T
153
M
NS2A:
V
175
I
NS2A:
L
178
F
NS2A:
G
200
E
NS2B
NS2B:
P
57
A
NS2B:
I
109
V
NS3
NS3:
T
112
M
NS3:
T
115
I
NS3:
R
255
K
NS3:
E
350
D
NS3:
A
452
V
NS3:
Q
568
E
NS4A
NS4A:
D
36
H
NS4A:
A
68
V
NS4A:
I
78
V
NS4A:
I
89
V
NS4A:
E
99
D
NS4A:
V
100
I
NS4B
NS4B:
V
22
A
NS4B:
I
115
V
NS4B:
S
157
P
NS4B:
I
159
V
NS4B:
F
160
Y
NS4B:
L
190
F
NS5
NS5:
T
50
I
NS5:
V
72
I
NS5:
H
246
Y
NS5:
K
281
R
NS5:
N
288
S
NS5:
M
336
T
NS5:
R
364
K
NS5:
P
365
T
NS5:
A
372
V
NS5:
K
422
R
NS5:
I
553
T
NS5:
T
585
K
NS5:
L
603
V
NS5:
V
619
I
NS5:
T
629
S
NS5:
A
631
T
NS5:
L
639
P
NS5:
T
649
S
Show more
prM
prM:
H
55
L
prM:
T
107
A
prM:
V
120
I
Deletions
None
Insertions
None
Load sequences