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GS_00GK3EG.1
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Download FASTA
Download metadata TSV
Display Name: USA/GS_00GK3EG.1/2015-01-01
W. Sekine,
H. Kamiki,
H. Ishida,
H. Matsugo,
K. Ohira,
M. Katayama,
A. Ichikawa,
Y. Wakabayashi,
A. Uema,
S. Murakami &
T. Horimoto
Submission details
Submission ID
LC909064.1.seg1/LC909065.1.seg2/LC909066.1.seg3/LC909067.1.seg4/LC909068.1.seg5/LC909069.1.seg6/LC909070.1.seg7/LC909071.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-12-26 06:07:12 UTC
Date released
2025-12-26 06:08:11 UTC
Authors
Author affiliations
Laboratory of Veterinary Microbiology; 1-1-1 Yayoi, Bunkyo, Tokyo 113-8657
Alignment states and QC metrics seg1
Completeness seg1
100.00%
Length seg1
2341
Total ambiguous nucs seg1
0
Total deleted nucs seg1
0
Total frame shifts seg1
0
Total inserted nucs seg1
0
Total SNPs seg1
400
Total unknown nucs seg1
0
Alignment states and QC metrics seg2
Completeness seg2
100.00%
Length seg2
2341
Total ambiguous nucs seg2
0
Total deleted nucs seg2
0
Total frame shifts seg2
0
Total inserted nucs seg2
0
Total SNPs seg2
316
Total unknown nucs seg2
0
Alignment states and QC metrics seg3
Completeness seg3
100.00%
Length seg3
2233
Total ambiguous nucs seg3
0
Total deleted nucs seg3
0
Total frame shifts seg3
0
Total inserted nucs seg3
0
Total SNPs seg3
392
Total unknown nucs seg3
0
Alignment states and QC metrics seg5
Completeness seg5
100.00%
Length seg5
1565
Total ambiguous nucs seg5
0
Total deleted nucs seg5
1
Total frame shifts seg5
0
Total inserted nucs seg5
0
Total SNPs seg5
276
Total unknown nucs seg5
0
Alignment states and QC metrics seg7
Completeness seg7
100.00%
Length seg7
1027
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
0
Total SNPs seg7
130
Total unknown nucs seg7
0
Alignment states and QC metrics seg8
Completeness seg8
100.00%
Length seg8
890
Total ambiguous nucs seg8
0
Total deleted nucs seg8
0
Total frame shifts seg8
0
Total inserted nucs seg8
0
Total SNPs seg8
125
Total unknown nucs seg8
0
Sample details
Collection country
USA
Collection subdivision level 1
Wisconsin, Madison
Collection date
2015-01-01
Isolate name
A/canine/Madison/5/2015
Host
Host name scientific
Canis lupus familiaris
Host taxon id
9615
INSDC
INSDC accession seg1
LC909064.1
INSDC accession seg2
LC909065.1
INSDC accession seg3
LC909066.1
INSDC accession seg4
LC909067.1
INSDC accession seg5
LC909068.1
INSDC accession seg6
LC909069.1
INSDC accession seg7
LC909070.1
INSDC accession seg8
LC909071.1
NCBI release date
2025-12-24
Alignment states and QC metrics seg4
Length seg4
1765
Alignment states and QC metrics seg6
Length seg6
1467
INSDC seg4
Subtype seg4
H3
INSDC seg6
Subtype seg6
N2
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg1
seg1:
A
4
G
seg1:
G
26
A
seg1:
C
46
T
seg1:
C
49
A
seg1:
G
51
A
seg1:
A
52
G
seg1:
C
54
T
seg1:
G
57
A
seg1:
T
69
C
seg1:
G
87
A
seg1:
A
99
T
seg1:
T
108
C
seg1:
T
120
C
seg1:
G
126
A
seg1:
G
135
A
seg1:
G
144
A
seg1:
A
147
G
seg1:
G
156
T
Show more
seg2
seg2:
A
4
G
seg2:
C
43
T
seg2:
G
48
T
seg2:
C
52
T
seg2:
A
54
G
seg2:
G
57
A
seg2:
T
60
G
seg2:
G
66
A
seg2:
C
75
T
seg2:
C
81
T
seg2:
C
84
T
seg2:
T
105
C
seg2:
A
129
G
seg2:
C
156
T
seg2:
C
165
T
seg2:
T
171
C
seg2:
G
180
A
seg2:
G
183
A
Show more
seg3
seg3:
A
4
G
seg3:
T
20
C
seg3:
G
22
A
seg3:
G
31
A
seg3:
T
33
C
seg3:
C
54
T
seg3:
G
57
A
seg3:
A
69
G
seg3:
A
75
G
seg3:
A
81
G
seg3:
A
99
G
seg3:
G
102
A
seg3:
T
107
C
seg3:
G
108
A
seg3:
T
114
C
seg3:
A
120
C
seg3:
T
129
C
seg3:
A
132
T
Show more
seg5
seg5:
T
15
A
seg5:
A
16
G
seg5:
C
29
T
seg5:
A
42
C
seg5:
A
43
G
seg5:
C
54
T
seg5:
G
69
A
seg5:
T
72
G
seg5:
A
92
G
seg5:
G
96
A
seg5:
T
99
A
seg5:
A
111
T
seg5:
T
114
C
seg5:
T
120
A
seg5:
G
123
A
seg5:
C
129
T
seg5:
C
132
T
seg5:
A
136
C
Show more
seg7
seg7:
C
31
T
seg7:
T
55
C
seg7:
G
68
A
seg7:
T
70
C
seg7:
T
124
A
seg7:
A
136
C
seg7:
T
142
C
seg7:
T
178
C
seg7:
C
188
T
seg7:
G
190
A
seg7:
G
205
A
seg7:
G
208
A
seg7:
C
277
A
seg7:
A
289
G
seg7:
T
292
C
seg7:
T
298
C
seg7:
A
309
G
seg7:
A
310
G
Show more
seg8
seg8:
G
21
A
seg8:
T
32
C
seg8:
T
50
C
seg8:
C
53
T
seg8:
T
62
C
seg8:
A
78
G
seg8:
G
83
C
seg8:
A
88
G
seg8:
G
90
T
seg8:
T
94
C
seg8:
A
108
G
seg8:
T
143
A
seg8:
G
148
A
seg8:
G
158
A
seg8:
A
169
G
seg8:
T
170
C
seg8:
T
173
C
seg8:
C
176
T
Show more
Deletions
seg5:1545
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
M1
M1:
V
15
I
M1:
K
95
R
M1:
I
115
V
M1:
A
121
T
M1:
A
137
T
M1:
A
167
T
M1:
K
174
R
M1:
I
205
V
M1:
S
207
N
M1:
A
218
T
M1:
V
219
I
M1:
T
227
A
M1:
R
230
K
M1:
T
239
A
M2
M2:
I
11
T
M2:
G
16
E
M2:
R
18
K
M2:
N
20
S
M2:
V
27
I
M2:
V
28
T
M2:
A
29
T
M2:
V
51
I
M2:
L
54
R
M2:
F
55
L
M2:
H
57
Y
M2:
K
78
Q
M2:
N
82
S
M2:
A
86
V
M2:
S
89
G
M2:
S
93
N
NEP
NEP:
L
14
I
NEP:
I
40
F
NEP:
L
57
S
NEP:
N
60
S
NEP:
G
70
S
NEP:
I
80
V
NEP:
T
89
I
NEP:
F
107
L
NP
NP:
D
16
G
NP:
D
18
E
NP:
K
31
R
NP:
I
33
V
NP:
D
34
G
NP:
L
61
I
NP:
K
65
R
NP:
V
100
R
NP:
M
105
V
NP:
N
125
G
NP:
I
136
L
NP:
M
159
L
NP:
I
186
V
NP:
V
197
I
NP:
K
214
R
NP:
S
217
I
NP:
V
239
M
NP:
A
280
V
Show more
NS1
NS1:
I
18
V
NS1:
Q
21
R
NS1:
V
22
F
NS1:
V
23
A
NS1:
S
28
G
NS1:
D
39
E
NS1:
R
41
K
NS1:
N
48
S
NS1:
A
56
T
NS1:
H
59
R
NS1:
V
60
I
NS1:
K
67
W
NS1:
K
70
E
NS1:
E
75
K
NS1:
M
81
I
NS1:
V
82
A
NS1:
T
84
V
NS1:
A
86
V
Show more
PA
PA:
D
3
N
PA:
L
28
P
PA:
N
55
D
PA:
Q
57
R
PA:
V
62
I
PA:
L
65
H
PA:
D
66
S
PA:
A
100
V
PA:
N
142
K
PA:
I
155
M
PA:
N
184
S
PA:
K
204
R
PA:
S
208
A
PA:
K
222
N
PA:
C
225
S
PA:
D
234
N
PA:
C
241
Y
PA:
E
243
D
Show more
PA-X
PA-X:
D
3
N
PA-X:
L
28
P
PA-X:
N
55
D
PA-X:
Q
57
R
PA-X:
V
62
I
PA-X:
L
65
H
PA-X:
D
66
S
PA-X:
A
100
V
PA-X:
N
142
K
PA-X:
I
155
M
PA-X:
N
184
S
PA-X:
K
199
R
PA-X:
N
204
D
PA-X:
L
210
P
PA-X:
V
212
A
PA-X:
N
222
T
PA-X:
R
227
K
PA-X:
W
233
*
Show more
PB1
PB1:
L
108
I
PB1:
V
200
I
PB1:
V
212
L
PB1:
G
216
N
PB1:
L
218
V
PB1:
K
327
R
PB1:
I
336
V
PB1:
R
361
N
PB1:
S
375
N
PB1:
D
377
N
PB1:
I
397
T
PB1:
V
423
I
PB1:
K
430
R
PB1:
T
469
I
PB1:
K
486
R
PB1:
I
517
V
PB1:
F
574
S
PB1:
D
581
E
Show more
PB1-F2
PB1-F2:
E
4
G
PB1-F2:
T
13
I
PB1-F2:
T
16
I
PB1-F2:
I
18
T
PB1-F2:
R
21
K
PB1-F2:
G
22
E
PB1-F2:
S
23
N
PB1-F2:
R
25
Q
PB1-F2:
I
27
T
PB1-F2:
G
31
E
PB1-F2:
T
36
I
PB1-F2:
L
43
P
PB1-F2:
S
47
N
PB1-F2:
V
49
A
PB1-F2:
T
55
I
PB1-F2:
S
57
C
PB1-F2:
R
59
K
PB1-F2:
L
60
Q
Show more
PB2
PB2:
N
9
D
PB2:
S
44
A
PB2:
T
64
M
PB2:
V
67
I
PB2:
T
76
I
PB2:
M
81
T
PB2:
V
105
T
PB2:
A
106
T
PB2:
D
120
E
PB2:
I
147
T
PB2:
R
194
Q
PB2:
D
195
N
PB2:
S
199
A
PB2:
I
227
V
PB2:
A
271
T
PB2:
S
334
N
PB2:
V
338
I
PB2:
M
365
I
Show more
Deletions
None
Insertions
None
Load sequences