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GS_00GE872.1
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Display Name: Solomon_Islands/GS_00GE872.1/2025-03-10
J. Moselen,
E. Steinig,
A. Darcy,
A. Manele,
A. Aziz,
N. Orlando,
P. Horwood,
L. Caly,
N. Karan,
J. Solomon &
C. K. Lim
Submission details
Submission ID
PX683075.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-12-18 03:48:14 UTC
Date released
2025-12-18 03:49:02 UTC
Authors
Author affiliations
Victorian Infectious Diseases Reference Laboratory, Victorian Infectious Disease Reference Laboratory
Clade & Lineage
Clade
1IV_A
Alignment states and QC metrics
Completeness
89.43%
Length
10447
Total ambiguous nucs
11
Total deleted nucs
30
Total frame shifts
0
Total inserted nucs
0
Total SNPs
421
Total unknown nucs
866
Sample details
Collection country
Solomon Islands
Collection date
2025-03-10
Isolate name
DENV1/Solomon-Islands/2025-03-10/VIDRL-DN0045
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PX683075.1
NCBI release date
2025-12-15
NCBI update date
2025-12-15
Nucleotide mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
T
49
C
A
86
G
T
230
C
C
263
T
G
302
A
A
361
G
G
385
A
G
393
A
C
429
T
G
434
A
A
499
G
T
557
C
T
582
C
C
598
T
G
610
A
G
652
A
A
683
G
C
694
T
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Deletions
10280-10309
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
C
C:
G
70
S
C:
R
100
K
C:
A
112
V
C:
A
114
T
E
E:
A
117
V
E:
T
161
I
E:
A
180
T
E:
K
203
E
E:
I
293
T
E:
M
297
T
E:
S
305
P
E:
T
346
I
E:
V
365
I
E:
V
432
M
E:
I
436
V
NS1
NS1:
N
73
S
NS1:
G
125
E
NS1:
P
144
S
NS1:
N
146
D
NS1:
K
192
R
NS1:
K
227
R
NS1:
H
290
Q
NS1:
T
307
I
NS2A
NS2A:
R
95
G
NS2A:
M
133
I
NS2A:
F
159
L
NS2B
NS2B:
A
29
T
NS2B:
L
95
I
NS3
NS3:
V
384
I
NS3:
N
400
S
NS4A
NS4A:
R
20
K
NS4A:
R
76
K
NS4A:
I
89
M
NS4A:
A
90
S
NS4A:
S
99
N
NS5
NS5:
I
34
M
NS5:
K
101
R
NS5:
T
135
I
NS5:
I
181
V
NS5:
K
311
R
NS5:
I
372
V
NS5:
R
378
K
NS5:
F
881
Y
prM
prM:
M
49
T
prM:
T
83
A
Deletions
None
Insertions
None
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