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Dengue 4
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GS_00GE7ZJ.1
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Display Name: Solomon_Islands/GS_00GE7ZJ.1/2023-12-31
J. Moselen,
E. Steinig,
A. Darcy,
A. Manele,
A. Aziz,
N. Orlando,
P. Horwood,
L. Caly,
N. Karan,
J. Solomon &
C. K. Lim
Submission details
Submission ID
PX683067.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-12-18 03:46:22 UTC
Date released
2025-12-18 03:47:17 UTC
Authors
Author affiliations
Victorian Infectious Diseases Reference Laboratory, Victorian Infectious Disease Reference Laboratory
Clade & Lineage
Clade
4II_A.1
Alignment states and QC metrics
Completeness
80.17%
Length
10511
Total ambiguous nucs
1
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
5
Total SNPs
554
Total unknown nucs
1969
Sample details
Collection country
Solomon Islands
Collection date
2023-12-31
Isolate name
DENV4/Solomon-Islands/2023-12-31/VIDRL-DN0029
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PX683067.1
NCBI release date
2025-12-15
NCBI update date
2025-12-15
Nucleotide mutations
Mutations called relative to the
NC_002640.1
reference
Substitutions
G
73
A
G
77
A
G
127
A
T
176
C
T
209
G
T
212
C
T
215
C
A
221
T
A
242
G
A
278
G
G
299
A
G
317
A
A
320
G
C
365
T
C
372
T
G
374
A
C
386
T
G
387
A
Show more
Deletions
10367
Insertions
ins_73:A, ins_10287:AG, ins_10466:NN
Amino acid mutations
Mutations called relative to the
NC_002640.1
reference
Substitutions
2K
2K:
I
21
V
C
C:
R
9
K
C:
K
40
N
C:
G
96
R
C:
K
98
R
C:
I
102
M
E
E:
S
120
L
E:
I
125
T
E:
I
132
V
E:
M
163
T
E:
H
230
R
E:
L
357
F
E:
N
384
D
E:
M
454
L
NS1
NS1:
A
6
V
NS1:
S
9
N
NS1:
S
109
N
NS1:
S
152
F
NS1:
L
153
F
NS1:
L
217
F
NS1:
K
245
R
NS1:
V
265
A
NS2A
NS2A:
V
27
I
NS2A:
L
40
F
NS2A:
M
51
V
NS2A:
V
79
M
NS2A:
L
113
F
NS2A:
Q
138
H
NS2A:
M
158
T
NS2A:
P
159
S
NS2A:
L
171
F
NS2B
NS2B:
V
74
I
NS2B:
T
119
A
NS2B:
M
123
I
NS3
NS3:
K
14
Q
NS3:
A
17
T
NS3:
S
292
C
NS3:
A
321
S
NS3:
T
322
I
NS3:
K
381
R
NS3:
P
435
T
NS3:
E
558
K
NS3:
R
594
K
NS4A
NS4A:
S
12
T
NS4A:
R
20
K
NS4A:
R
36
K
NS4A:
I
78
M
NS4A:
T
87
A
NS4A:
V
117
A
NS4B
NS4B:
V
18
A
NS5
NS5:
N
204
S
NS5:
Q
285
R
NS5:
S
319
F
NS5:
I
335
V
NS5:
M
372
K
NS5:
V
373
I
NS5:
G
499
S
NS5:
E
521
D
NS5:
M
530
I
NS5:
Q
548
L
NS5:
I
563
T
NS5:
R
586
K
NS5:
G
676
S
NS5:
R
750
K
NS5:
Y
883
F
NS5:
V
886
A
NS5:
S
894
F
prM
prM:
S
2
H
Deletions
None
Insertions
None
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