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GS_00GE51H.1
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Download FASTA
Download metadata TSV
Display Name: Canada/GS_00GE51H.1/2025-11-01
F. Maguire,
N. Waglechner,
P. Aftanas,
K. Katz,
R. Kozak,
H. Li,
X. Li,
C. Vermeiren,
E. Xiong &
S. Mubareka
Submission details
Submission ID
PX683274.1.seg2/PX683275.1.seg3/PX683276.1.seg4/PX683277.1.seg5/PX683278.1.seg6/PX683279.1.seg7/PX683280.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-12-14 05:57:01 UTC
Date released
2025-12-14 05:58:08 UTC
Authors
Author affiliations
Shared Hospital Laboratory, Microbiology
INSDC
Bioproject accession
PRJNA1377212
INSDC accession seg2
PX683274.1
INSDC accession seg3
PX683275.1
INSDC accession seg4
PX683276.1
INSDC accession seg5
PX683277.1
INSDC accession seg6
PX683278.1
INSDC accession seg7
PX683279.1
INSDC accession seg8
PX683280.1
NCBI release date
2025-12-11
Clade
Clade HA
3C.2a1b.2a.2a.3a.1
Clade NA
B.4.2
Alignment states and QC metrics seg2
Completeness seg2
38.27%
Length seg2
896
Total ambiguous nucs seg2
0
Total deleted nucs seg2
0
Total frame shifts seg2
0
Total inserted nucs seg2
0
Total SNPs seg2
49
Total unknown nucs seg2
0
Alignment states and QC metrics seg3
Completeness seg3
73.98%
Length seg3
2233
Total ambiguous nucs seg3
0
Total deleted nucs seg3
0
Total frame shifts seg3
0
Total inserted nucs seg3
1
Total SNPs seg3
72
Total unknown nucs seg3
580
Alignment states and QC metrics seg4
Completeness seg4
92.29%
Length seg4
1724
Total ambiguous nucs seg4
0
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
2
Total SNPs seg4
115
Total unknown nucs seg4
119
Alignment states and QC metrics seg5
Completeness seg5
85.25%
Length seg5
1380
Total ambiguous nucs seg5
0
Total deleted nucs seg5
0
Total frame shifts seg5
0
Total inserted nucs seg5
0
Total SNPs seg5
53
Total unknown nucs seg5
45
Alignment states and QC metrics seg6
Completeness seg6
100.00%
Length seg6
1463
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
27
Total SNPs seg6
77
Total unknown nucs seg6
0
Alignment states and QC metrics seg7
Completeness seg7
100.00%
Length seg7
1027
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
0
Total SNPs seg7
26
Total unknown nucs seg7
0
Alignment states and QC metrics seg8
Completeness seg8
99.89%
Length seg8
889
Total ambiguous nucs seg8
0
Total deleted nucs seg8
0
Total frame shifts seg8
0
Total inserted nucs seg8
0
Total SNPs seg8
30
Total unknown nucs seg8
0
Sample details
Collection country
Canada
Collection subdivision level 1
Toronto
Collection date
2025-11-01
Isolate name
A/Toronto/ON-SHL-FLUA-2025-00171/2025
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC seg4
Subtype seg4
H3
INSDC seg6
Subtype seg6
N2
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg2
seg2:
C
1425
T
seg2:
A
1440
G
seg2:
C
1449
T
seg2:
A
1503
T
seg2:
T
1509
C
seg2:
T
1551
G
seg2:
C
1554
A
seg2:
G
1566
A
seg2:
T
1590
C
seg2:
T
1596
C
seg2:
C
1632
T
seg2:
G
1644
A
seg2:
G
1659
A
seg2:
C
1686
T
seg2:
T
1695
C
seg2:
A
1698
G
seg2:
A
1702
C
seg2:
T
1728
C
Show more
seg3
seg3:
G
22
A
seg3:
A
99
G
seg3:
A
120
C
seg3:
C
144
T
seg3:
A
156
G
seg3:
T
174
C
seg3:
T
177
C
seg3:
G
210
A
seg3:
T
222
C
seg3:
G
243
A
seg3:
A
324
T
seg3:
A
333
G
seg3:
C
340
T
seg3:
A
342
G
seg3:
A
345
G
seg3:
G
363
A
seg3:
T
369
C
seg3:
A
396
G
Show more
seg4
seg4:
A
24
G
seg4:
T
42
A
seg4:
G
56
T
seg4:
A
71
C
seg4:
C
72
A
seg4:
T
74
A
seg4:
C
77
T
seg4:
C
89
T
seg4:
A
281
G
seg4:
T
296
C
seg4:
C
302
T
seg4:
A
305
G
seg4:
A
312
G
seg4:
C
335
A
seg4:
A
340
G
seg4:
T
345
A
seg4:
A
352
G
seg4:
C
413
A
Show more
seg5
seg5:
G
207
A
seg5:
G
219
A
seg5:
G
237
A
seg5:
C
249
T
seg5:
G
327
T
seg5:
A
351
G
seg5:
G
390
A
seg5:
G
432
T
seg5:
G
436
T
seg5:
T
447
C
seg5:
A
451
C
seg5:
C
459
T
seg5:
G
492
A
seg5:
A
513
G
seg5:
T
525
C
seg5:
G
555
A
seg5:
A
582
C
seg5:
C
603
T
Show more
seg6
seg6:
C
36
T
seg6:
C
51
A
seg6:
A
60
G
seg6:
T
88
C
seg6:
T
96
C
seg6:
C
144
T
seg6:
C
205
T
seg6:
T
245
C
seg6:
G
270
A
seg6:
A
280
G
seg6:
A
281
G
seg6:
T
303
C
seg6:
C
345
A
seg6:
C
380
T
seg6:
G
408
A
seg6:
C
429
T
seg6:
G
442
A
seg6:
G
459
A
Show more
seg7
seg7:
A
37
T
seg7:
C
188
T
seg7:
G
205
A
seg7:
G
214
T
seg7:
A
241
G
seg7:
T
292
C
seg7:
T
298
C
seg7:
A
466
G
seg7:
A
481
G
seg7:
C
493
T
seg7:
A
517
G
seg7:
G
523
A
seg7:
A
637
G
seg7:
A
658
G
seg7:
G
680
A
seg7:
C
697
T
seg7:
T
703
C
seg7:
C
787
T
Show more
seg8
seg8:
C
53
T
seg8:
G
83
A
seg8:
G
102
A
seg8:
A
104
C
seg8:
C
116
T
seg8:
C
123
A
seg8:
T
125
C
seg8:
G
192
T
seg8:
T
205
C
seg8:
T
218
C
seg8:
A
238
G
seg8:
T
271
C
seg8:
C
275
G
seg8:
G
353
A
seg8:
G
398
A
seg8:
G
416
A
seg8:
G
430
A
seg8:
A
442
G
Show more
Deletions
None
Insertions
ins_seg3:2211:A, ins_seg4:1737:CC, ins_seg6:0:AAAGCAGGAGTA, ins_seg6:1436:CTCCTTGTTTCTACT
Amino acid mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
K
2
N
HA1:
L
3
I
HA1:
K
83
E
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
96
S
HA1:
N
121
K
HA1:
T
131
K
HA1:
T
135
K
HA1:
S
138
A
HA1:
R
142
G
HA1:
N
145
S
HA1:
H
156
S
HA1:
K
158
D
HA1:
F
159
N
HA1:
L
164
Q
HA1:
N
171
K
HA1:
K
173
R
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
I
77
V
HA2:
R
121
K
HA2:
G
155
E
HA2:
D
160
N
HA2:
I
193
M
HA2:
V
200
I
M1
M1:
V
219
I
M2
M2:
P
25
L
M2:
S
31
N
M2:
L
54
F
M2:
N
82
S
M2:
D
88
A
NA
NA:
L
81
P
NA:
N
93
G
NA:
P
126
L
NA:
D
147
N
NA:
V
194
I
NA:
I
215
V
NA:
K
220
N
NA:
E
221
D
NA:
S
245
N
NA:
S
247
T
NA:
H
264
N
NA:
T
267
K
NA:
L
285
P
NA:
V
303
I
NA:
Y
310
H
NA:
S
315
R
NA:
N
329
S
NA:
D
339
N
Show more
NP
NP:
A
131
S
NP:
I
136
L
NP:
V
197
I
NP:
R
236
K
NP:
T
472
A
NS1
NS1:
E
26
N
NS1:
L
33
I
NS1:
A
56
S
NS1:
V
60
A
NS1:
E
71
G
NS1:
V
82
A
NS1:
M
124
I
NS1:
S
135
N
NS1:
D
139
G
NS1:
I
171
V
NS1:
L
185
F
NS1:
K
221
E
NS1:
K
229
E
PA
PA:
N
142
K
PA:
I
155
M
PA:
K
158
R
PA:
I
311
M
PA:
Y
321
C
PA:
I
421
V
PA:
Y
437
H
PA:
I
602
V
PA:
K
605
R
PA:
V
668
I
PA:
N
675
K
PA-X
PA-X:
N
142
K
PA-X:
I
155
M
PA-X:
K
158
R
PB1
PB1:
L
576
I
PB1:
R
586
K
PB1:
A
587
T
PB1:
E
618
D
PB1:
N
667
I
PB1:
M
744
I
PB1:
*
758
Q
SigPep
SigPep:
T
3
A
SigPep:
Y
9
N
Deletions
None
Insertions
None
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