GenSpectrum
Organisms
Influenza A/H3N2
GenSpectrum
Organisms
Influenza B/Victoria
Dengue 1
Dengue 2
Dengue 3
Dengue 4
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
Docs
API docs
Influenza A/H3N2
|
Browse data
Select organism section
Browse data
GS_00GE4VV.1
Download
Download FASTA
Download metadata TSV
Display Name: Canada/GS_00GE4VV.1/2025-11-01
F. Maguire,
N. Waglechner,
P. Aftanas,
K. Katz,
R. Kozak,
H. Li,
X. Li,
C. Vermeiren,
E. Xiong &
S. Mubareka
Submission details
Submission ID
PX683230.1.seg2/PX683231.1.seg4/PX683232.1.seg5/PX683233.1.seg6/PX683234.1.seg7/PX683235.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-12-14 05:57:01 UTC
Date released
2025-12-14 05:58:08 UTC
Authors
Author affiliations
Shared Hospital Laboratory, Microbiology
INSDC
Bioproject accession
PRJNA1377212
INSDC accession seg2
PX683230.1
INSDC accession seg4
PX683231.1
INSDC accession seg5
PX683232.1
INSDC accession seg6
PX683233.1
INSDC accession seg7
PX683234.1
INSDC accession seg8
PX683235.1
NCBI release date
2025-12-11
Clade
Clade HA
3C.2a1b.2a.2a.3a.1
Clade NA
B.4.2
Alignment states and QC metrics seg2
Completeness seg2
38.27%
Length seg2
896
Total ambiguous nucs seg2
0
Total deleted nucs seg2
0
Total frame shifts seg2
0
Total inserted nucs seg2
0
Total SNPs seg2
48
Total unknown nucs seg2
0
Alignment states and QC metrics seg4
Completeness seg4
75.13%
Length seg4
1694
Total ambiguous nucs seg4
0
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
2
Total SNPs seg4
81
Total unknown nucs seg4
387
Alignment states and QC metrics seg5
Completeness seg5
95.59%
Length seg5
1497
Total ambiguous nucs seg5
0
Total deleted nucs seg5
0
Total frame shifts seg5
0
Total inserted nucs seg5
0
Total SNPs seg5
55
Total unknown nucs seg5
0
Alignment states and QC metrics seg6
Completeness seg6
100.00%
Length seg6
1457
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
21
Total SNPs seg6
77
Total unknown nucs seg6
0
Alignment states and QC metrics seg7
Completeness seg7
100.00%
Length seg7
1027
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
0
Total SNPs seg7
27
Total unknown nucs seg7
0
Alignment states and QC metrics seg8
Completeness seg8
99.89%
Length seg8
889
Total ambiguous nucs seg8
0
Total deleted nucs seg8
0
Total frame shifts seg8
0
Total inserted nucs seg8
0
Total SNPs seg8
30
Total unknown nucs seg8
0
Sample details
Collection country
Canada
Collection subdivision level 1
Toronto
Collection date
2025-11-01
Isolate name
A/Toronto/ON-SHL-FLUA-2025-00148/2025
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC seg4
Subtype seg4
H3
INSDC seg6
Subtype seg6
N2
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg2
seg2:
C
1425
T
seg2:
A
1440
G
seg2:
C
1449
T
seg2:
A
1503
T
seg2:
T
1509
C
seg2:
T
1551
G
seg2:
C
1554
A
seg2:
G
1566
A
seg2:
T
1590
C
seg2:
T
1596
C
seg2:
C
1632
T
seg2:
G
1644
A
seg2:
G
1659
A
seg2:
C
1686
T
seg2:
T
1695
C
seg2:
A
1698
G
seg2:
A
1702
C
seg2:
T
1728
C
Show more
seg4
seg4:
G
56
T
seg4:
A
71
C
seg4:
C
72
A
seg4:
T
74
A
seg4:
C
77
T
seg4:
C
89
T
seg4:
A
281
G
seg4:
T
296
C
seg4:
C
302
T
seg4:
A
305
G
seg4:
A
312
G
seg4:
C
335
A
seg4:
A
340
G
seg4:
T
345
A
seg4:
A
352
G
seg4:
C
428
A
seg4:
T
449
C
seg4:
C
457
A
Show more
seg5
seg5:
G
81
A
seg5:
G
96
A
seg5:
T
180
G
seg5:
G
207
A
seg5:
G
219
A
seg5:
G
237
A
seg5:
C
249
T
seg5:
A
351
G
seg5:
G
390
A
seg5:
G
432
T
seg5:
G
436
T
seg5:
T
447
C
seg5:
A
451
C
seg5:
C
459
T
seg5:
G
492
A
seg5:
A
513
G
seg5:
T
525
C
seg5:
A
582
C
Show more
seg6
seg6:
C
36
T
seg6:
C
51
A
seg6:
A
60
G
seg6:
T
88
C
seg6:
T
96
C
seg6:
C
144
T
seg6:
C
205
T
seg6:
T
245
C
seg6:
G
270
A
seg6:
A
280
G
seg6:
A
281
G
seg6:
T
303
C
seg6:
C
345
A
seg6:
C
380
T
seg6:
G
408
A
seg6:
C
429
T
seg6:
G
442
A
seg6:
G
459
A
Show more
seg7
seg7:
A
37
T
seg7:
C
188
T
seg7:
G
205
A
seg7:
G
214
T
seg7:
A
241
G
seg7:
T
292
C
seg7:
T
298
C
seg7:
A
466
G
seg7:
A
481
G
seg7:
C
493
T
seg7:
A
517
G
seg7:
G
523
A
seg7:
A
637
G
seg7:
A
658
G
seg7:
G
680
A
seg7:
C
697
T
seg7:
T
703
C
seg7:
C
787
T
Show more
seg8
seg8:
C
53
T
seg8:
G
83
A
seg8:
G
102
A
seg8:
A
104
C
seg8:
C
116
T
seg8:
C
123
A
seg8:
T
125
C
seg8:
G
192
T
seg8:
T
205
C
seg8:
T
218
C
seg8:
A
238
G
seg8:
T
271
C
seg8:
C
275
G
seg8:
G
353
A
seg8:
G
398
A
seg8:
G
416
A
seg8:
G
430
A
seg8:
A
442
G
Show more
Deletions
None
Insertions
ins_seg4:1737:CC, ins_seg6:0:AAAGCAGGAGTA, ins_seg6:1436:CTCCTTGTT
Amino acid mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
K
2
N
HA1:
L
3
I
HA1:
K
83
E
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
96
S
HA1:
N
121
K
HA1:
T
131
K
HA1:
T
135
K
HA1:
I
223
V
HA1:
N
225
D
HA1:
K
276
E
HA1:
N
278
K
HA1:
N
312
S
HA1:
T
328
A
HA2
HA2:
I
6
K
HA2:
V
18
M
HA2:
I
32
R
HA2:
N
46
D
HA2:
I
77
V
HA2:
R
121
K
HA2:
G
155
E
HA2:
D
160
N
HA2:
I
193
M
HA2:
V
200
I
M1
M1:
V
219
I
M2
M2:
P
25
L
M2:
S
31
N
M2:
I
42
M
M2:
L
54
F
M2:
N
82
S
M2:
D
88
A
NA
NA:
L
81
P
NA:
N
93
G
NA:
P
126
L
NA:
D
147
N
NA:
V
194
I
NA:
I
215
V
NA:
K
220
N
NA:
E
221
D
NA:
S
245
N
NA:
S
247
T
NA:
H
264
N
NA:
T
267
K
NA:
L
285
P
NA:
V
303
I
NA:
Y
310
H
NA:
S
315
R
NA:
N
329
S
NA:
D
339
N
Show more
NP
NP:
A
131
S
NP:
I
136
L
NP:
V
197
I
NP:
R
236
K
NP:
T
472
A
NS1
NS1:
E
26
N
NS1:
L
33
I
NS1:
A
56
S
NS1:
V
60
A
NS1:
E
71
G
NS1:
V
82
A
NS1:
M
124
I
NS1:
S
135
N
NS1:
D
139
G
NS1:
I
171
V
NS1:
L
185
F
NS1:
K
221
E
NS1:
K
229
E
PB1
PB1:
L
576
I
PB1:
R
586
K
PB1:
A
587
T
PB1:
E
618
D
PB1:
N
667
I
PB1:
*
758
Q
Deletions
None
Insertions
None
Load sequences