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GS_00GE4S1.1
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Display Name: Canada/GS_00GE4S1.1/2025-11-01
F. Maguire,
N. Waglechner,
P. Aftanas,
K. Katz,
R. Kozak,
H. Li,
X. Li,
C. Vermeiren,
E. Xiong &
S. Mubareka
Submission details
Submission ID
PX683213.1.seg1/PX683214.1.seg3/PX683215.1.seg4/PX683216.1.seg6/PX683217.1.seg7/PX683218.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-12-14 05:57:01 UTC
Date released
2025-12-14 05:58:08 UTC
Authors
Author affiliations
Shared Hospital Laboratory, Microbiology
INSDC
Bioproject accession
PRJNA1377212
INSDC accession seg1
PX683213.1
INSDC accession seg3
PX683214.1
INSDC accession seg4
PX683215.1
INSDC accession seg6
PX683216.1
INSDC accession seg7
PX683217.1
INSDC accession seg8
PX683218.1
NCBI release date
2025-12-11
Clade
Clade HA
3C.2a1b.2a.2a.3a.1
Clade NA
B.4.2
Alignment states and QC metrics seg1
Completeness seg1
29.90%
Length seg1
700
Total ambiguous nucs seg1
0
Total deleted nucs seg1
0
Total frame shifts seg1
0
Total inserted nucs seg1
0
Total SNPs seg1
23
Total unknown nucs seg1
0
Alignment states and QC metrics seg3
Completeness seg3
63.59%
Length seg3
2004
Total ambiguous nucs seg3
0
Total deleted nucs seg3
147
Total frame shifts seg3
0
Total inserted nucs seg3
0
Total SNPs seg3
51
Total unknown nucs seg3
731
Alignment states and QC metrics seg4
Completeness seg4
37.71%
Length seg4
660
Total ambiguous nucs seg4
0
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
38
Total unknown nucs seg4
5
Alignment states and QC metrics seg6
Completeness seg6
100.00%
Length seg6
1457
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
21
Total SNPs seg6
79
Total unknown nucs seg6
0
Alignment states and QC metrics seg7
Completeness seg7
100.00%
Length seg7
1027
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
0
Total SNPs seg7
26
Total unknown nucs seg7
0
Alignment states and QC metrics seg8
Completeness seg8
99.55%
Length seg8
886
Total ambiguous nucs seg8
0
Total deleted nucs seg8
0
Total frame shifts seg8
0
Total inserted nucs seg8
0
Total SNPs seg8
30
Total unknown nucs seg8
0
Sample details
Collection country
Canada
Collection subdivision level 1
Toronto
Collection date
2025-11-01
Isolate name
A/Toronto/ON-SHL-FLUA-2025-00136/2025
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC seg4
Subtype seg4
H3
INSDC seg6
Subtype seg6
N2
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg1
seg1:
A
1611
C
seg1:
A
1617
T
seg1:
G
1626
A
seg1:
C
1647
T
seg1:
A
1692
G
seg1:
G
1705
A
seg1:
A
1716
G
seg1:
T
1728
C
seg1:
T
1790
C
seg1:
C
1863
T
seg1:
A
1864
G
seg1:
C
1896
T
seg1:
A
1941
G
seg1:
A
2019
G
seg1:
C
2031
T
seg1:
A
2070
G
seg1:
T
2109
C
seg1:
G
2124
A
Show more
seg3
seg3:
A
99
G
seg3:
A
120
C
seg3:
C
144
T
seg3:
A
156
G
seg3:
T
174
C
seg3:
T
177
C
seg3:
G
210
A
seg3:
T
222
C
seg3:
G
243
A
seg3:
A
324
T
seg3:
A
333
G
seg3:
C
340
T
seg3:
A
342
G
seg3:
A
345
G
seg3:
A
1158
G
seg3:
C
1170
A
seg3:
C
1269
T
seg3:
A
1285
G
Show more
seg4
seg4:
T
971
C
seg4:
T
989
C
seg4:
A
1000
G
seg4:
T
1004
C
seg4:
G
1022
A
seg4:
A
1037
T
seg4:
A
1047
G
seg4:
T
1049
C
seg4:
C
1064
T
seg4:
C
1070
A
seg4:
T
1076
C
seg4:
T
1091
A
seg4:
T
1147
G
seg4:
A
1188
G
seg4:
A
1198
G
seg4:
A
1212
C
seg4:
G
1214
A
seg4:
G
1223
A
Show more
seg6
seg6:
C
16
A
seg6:
C
51
A
seg6:
A
60
G
seg6:
T
88
C
seg6:
T
96
C
seg6:
C
144
T
seg6:
C
205
T
seg6:
T
245
C
seg6:
G
270
A
seg6:
A
280
G
seg6:
A
281
G
seg6:
T
303
C
seg6:
C
345
A
seg6:
C
380
T
seg6:
G
408
A
seg6:
C
429
T
seg6:
G
442
A
seg6:
G
459
A
Show more
seg7
seg7:
A
37
T
seg7:
C
188
T
seg7:
G
205
A
seg7:
G
208
T
seg7:
G
214
T
seg7:
A
241
G
seg7:
T
292
C
seg7:
T
298
C
seg7:
G
328
A
seg7:
T
424
C
seg7:
A
466
G
seg7:
A
481
G
seg7:
C
493
T
seg7:
A
517
G
seg7:
A
637
G
seg7:
A
658
G
seg7:
G
680
A
seg7:
C
697
T
Show more
seg8
seg8:
C
53
T
seg8:
G
83
A
seg8:
G
102
A
seg8:
A
104
C
seg8:
C
116
T
seg8:
C
123
A
seg8:
T
125
C
seg8:
G
192
T
seg8:
T
205
C
seg8:
T
218
C
seg8:
A
238
G
seg8:
C
275
G
seg8:
G
353
A
seg8:
G
398
A
seg8:
G
416
A
seg8:
G
430
A
seg8:
T
440
A
seg8:
A
442
G
Show more
Deletions
seg3:355-501
Insertions
ins_seg6:0:AAAGCAGGAGTA, ins_seg6:1436:CTCCTTGTT
Amino acid mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
N
312
S
HA1:
T
328
A
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
N
49
S
HA2:
I
77
V
HA2:
R
121
K
HA2:
G
155
E
HA2:
D
160
N
M1
M1:
V
219
I
M2
M2:
P
25
L
M2:
S
31
N
M2:
L
54
F
M2:
N
82
S
NA
NA:
Q
5
K
NA:
L
81
P
NA:
N
93
G
NA:
P
126
L
NA:
D
147
N
NA:
V
194
I
NA:
I
215
V
NA:
K
220
N
NA:
E
221
D
NA:
S
245
N
NA:
S
247
T
NA:
H
264
N
NA:
T
267
K
NA:
L
285
P
NA:
V
303
I
NA:
Y
310
H
NA:
S
315
R
NA:
N
329
S
Show more
NS1
NS1:
E
26
N
NS1:
L
33
I
NS1:
A
56
S
NS1:
V
60
A
NS1:
E
71
G
NS1:
M
124
I
NS1:
S
135
N
NS1:
F
138
L
NS1:
D
139
G
NS1:
I
171
V
NS1:
L
185
F
NS1:
K
221
E
NS1:
K
229
E
PA
PA:
D
382
E
PA:
I
421
V
PA:
Y
437
H
PA:
I
602
V
PA:
K
605
R
PA:
V
668
I
PA:
N
675
K
PB2
PB2:
V
560
I
PB2:
I
588
T
PB2:
T
613
A
Deletions
PA:110-158, PA-X:110-158
Insertions
None
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