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GS_00GE4HK.1
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Display Name: Canada/GS_00GE4HK.1/2025-11-01
F. Maguire,
N. Waglechner,
P. Aftanas,
K. Katz,
R. Kozak,
H. Li,
X. Li,
C. Vermeiren,
E. Xiong &
S. Mubareka
Submission details
Submission ID
PX683132.1.seg2/PX683133.1.seg4/PX683134.1.seg6/PX683135.1.seg7/PX683136.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-12-14 05:57:01 UTC
Date released
2025-12-14 05:58:08 UTC
Authors
Author affiliations
Shared Hospital Laboratory, Microbiology
INSDC
Bioproject accession
PRJNA1377212
INSDC accession seg2
PX683132.1
INSDC accession seg4
PX683133.1
INSDC accession seg6
PX683134.1
INSDC accession seg7
PX683135.1
INSDC accession seg8
PX683136.1
NCBI release date
2025-12-11
Clade
Clade HA
3C.2a1
Clade NA
B.4.2
Alignment states and QC metrics seg2
Completeness seg2
38.49%
Length seg2
901
Total ambiguous nucs seg2
0
Total deleted nucs seg2
0
Total frame shifts seg2
0
Total inserted nucs seg2
0
Total SNPs seg2
48
Total unknown nucs seg2
0
Alignment states and QC metrics seg4
Completeness seg4
11.05%
Length seg4
344
Total ambiguous nucs seg4
0
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
9
Total unknown nucs seg4
152
Alignment states and QC metrics seg6
Completeness seg6
95.06%
Length seg6
1383
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
4
Total SNPs seg6
69
Total unknown nucs seg6
14
Alignment states and QC metrics seg7
Completeness seg7
100.00%
Length seg7
1027
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
0
Total SNPs seg7
26
Total unknown nucs seg7
0
Alignment states and QC metrics seg8
Completeness seg8
99.33%
Length seg8
885
Total ambiguous nucs seg8
1
Total deleted nucs seg8
0
Total frame shifts seg8
0
Total inserted nucs seg8
0
Total SNPs seg8
30
Total unknown nucs seg8
0
Sample details
Collection country
Canada
Collection subdivision level 1
Toronto
Collection date
2025-11-01
Isolate name
A/Toronto/ON-SHL-FLUA-2025-00106/2025
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC seg4
Subtype seg4
H3
INSDC seg6
Subtype seg6
N2
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg2
seg2:
C
1425
T
seg2:
A
1440
G
seg2:
C
1449
T
seg2:
A
1503
T
seg2:
T
1509
C
seg2:
T
1551
G
seg2:
C
1554
A
seg2:
G
1566
A
seg2:
T
1590
C
seg2:
T
1596
C
seg2:
C
1632
T
seg2:
G
1644
A
seg2:
G
1659
A
seg2:
C
1686
T
seg2:
T
1695
C
seg2:
A
1698
G
seg2:
A
1702
C
seg2:
T
1728
C
Show more
seg4
seg4:
A
1188
G
seg4:
A
1212
C
seg4:
G
1214
A
seg4:
G
1223
A
seg4:
C
1232
T
seg4:
A
1403
G
seg4:
G
1414
A
seg4:
G
1424
A
seg4:
C
1454
A
seg6
seg6:
C
36
T
seg6:
C
51
A
seg6:
A
60
G
seg6:
T
88
C
seg6:
T
96
C
seg6:
C
144
T
seg6:
C
205
T
seg6:
T
245
C
seg6:
G
270
A
seg6:
A
280
G
seg6:
A
281
G
seg6:
T
303
C
seg6:
C
345
A
seg6:
C
380
T
seg6:
G
408
A
seg6:
C
429
T
seg6:
G
442
A
seg6:
G
459
A
Show more
seg7
seg7:
A
37
T
seg7:
C
188
T
seg7:
G
205
A
seg7:
G
214
T
seg7:
A
241
G
seg7:
T
292
C
seg7:
T
298
C
seg7:
A
466
G
seg7:
A
481
G
seg7:
C
493
T
seg7:
A
517
G
seg7:
G
523
A
seg7:
A
637
G
seg7:
A
658
G
seg7:
G
680
A
seg7:
C
697
T
seg7:
T
703
C
seg7:
C
787
T
Show more
seg8
seg8:
C
53
T
seg8:
G
83
A
seg8:
G
102
A
seg8:
A
104
C
seg8:
C
116
T
seg8:
C
123
A
seg8:
T
125
C
seg8:
G
192
T
seg8:
T
205
C
seg8:
T
218
C
seg8:
A
238
G
seg8:
T
271
C
seg8:
C
275
G
seg8:
G
353
A
seg8:
G
398
A
seg8:
G
416
A
seg8:
G
430
A
seg8:
A
442
G
Show more
Deletions
None
Insertions
ins_seg6:0:AGTA
Amino acid mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA2
HA2:
N
46
D
HA2:
R
121
K
M1
M1:
V
219
I
M2
M2:
P
25
L
M2:
S
31
N
M2:
L
54
F
M2:
N
82
S
M2:
D
88
A
NA
NA:
L
81
P
NA:
N
93
G
NA:
P
126
L
NA:
D
147
N
NA:
V
194
I
NA:
I
215
V
NA:
K
220
N
NA:
E
221
D
NA:
S
245
N
NA:
S
247
T
NA:
H
264
N
NA:
T
267
K
NA:
L
285
P
NA:
V
303
I
NA:
Y
310
H
NA:
S
315
R
NA:
N
329
S
NA:
D
339
N
Show more
NS1
NS1:
E
26
N
NS1:
L
33
I
NS1:
A
56
S
NS1:
V
60
A
NS1:
E
71
G
NS1:
V
82
A
NS1:
M
124
I
NS1:
S
135
N
NS1:
D
139
G
NS1:
I
171
V
NS1:
L
185
F
NS1:
K
221
E
NS1:
K
229
E
PB1
PB1:
L
576
I
PB1:
R
586
K
PB1:
A
587
T
PB1:
E
618
D
PB1:
N
667
I
PB1:
*
758
Q
Deletions
None
Insertions
None
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