GS_00GDYA8.1

Display Name: Canada/GS_00GDYA8.1/2025-11-01
F. Maguire, N. Waglechner, P. Aftanas, K. Katz, R. Kozak, H. Li, X. Li, C. Vermeiren, E. Xiong & S. Mubareka

Submission details

Submission ID
PX671940.1.seg4/PX671941.1.seg6/PX671942.1.seg7
Submitting group
Date submitted
2025-12-13 05:48:50 UTC
Date released
2025-12-13 05:49:27 UTC

Authors

Author affiliations
Shared Hospital Laboratory, Microbiology

INSDC

Bioproject accession
INSDC accession seg4
INSDC accession seg6
INSDC accession seg7
NCBI release date
2025-12-09

Clade

Clade HA
3C.2a1b.2a.2a.3a.1
Clade NA
B.4

Alignment states and QC metrics seg4

Completeness seg4
47.09%
Length seg4
1090
Total ambiguous nucs seg4
1
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
62
Total unknown nucs seg4
271

Alignment states and QC metrics seg6

Completeness seg6
81.27%
Length seg6
1167
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
66
Total unknown nucs seg6
0

Alignment states and QC metrics seg7

Completeness seg7
95.62%
Length seg7
982
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
0
Total SNPs seg7
28
Total unknown nucs seg7
0

Sample details

Collection country
Canada
Collection subdivision level 1
Toronto
Collection date
2025-11-01
Isolate name
A/Toronto/ON-SHL-FLUA-2025-00045/2025

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC seg4

Subtype seg4
H3

INSDC seg6

Subtype seg6
N2

Nucleotide mutations

Mutations called relative to the NC_007373.1, NC_007372.1, NC_007371.1, CY163680.1, NC_007369.1, CY114383.1, NC_007367.1 & NC_007370.1 references

Substitutions

seg4

  • seg4:T477G
  • seg4:T479G
  • seg4:A489G
  • seg4:A499G
  • seg4:C500T
  • seg4:C506T
  • seg4:G518A
  • seg4:C531A
  • seg4:A532G
  • seg4:A537G
  • seg4:A539C
  • seg4:T540A
  • seg4:T541A
  • seg4:C548T
  • seg4:T555C
  • seg4:T556A
  • seg4:T578G
  • seg4:A582C

    • seg6

  • seg6:A60G
  • seg6:T88C
  • seg6:T96C
  • seg6:C144T
  • seg6:C205T
  • seg6:T245C
  • seg6:G270A
  • seg6:A280G
  • seg6:A281G
  • seg6:T303C
  • seg6:C345A
  • seg6:C380T
  • seg6:G408A
  • seg6:C429T
  • seg6:G442A
  • seg6:G459A
  • seg6:C474T
  • seg6:A492G

    • seg7

  • seg7:A37T
  • seg7:C188T
  • seg7:G205A
  • seg7:G214T
  • seg7:A241G
  • seg7:T292C
  • seg7:T298C
  • seg7:A466G
  • seg7:A481G
  • seg7:C493T
  • seg7:A517G
  • seg7:G523A
  • seg7:T535C
  • seg7:A637G
  • seg7:A658G
  • seg7:G664A
  • seg7:G680A
  • seg7:C697T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_007373.1, NC_007372.1, NC_007371.1, CY163680.1, NC_007369.1, CY114383.1, NC_007367.1 & NC_007370.1 references

    Substitutions

    HA1

  • HA1:S138A
  • HA1:R142G
  • HA1:N145S
  • HA1:H156S
  • HA1:K158D
  • HA1:F159N
  • HA1:L164Q
  • HA1:N171K
  • HA1:K173R
  • HA1:V186D
  • HA1:N189R
  • HA1:D190N
  • HA1:I192F
  • HA1:F193S
  • HA1:Y195F
  • HA1:A198S
  • HA1:T212A
  • HA1:I223V

    • HA2

  • HA2:N46D
  • HA2:I77V
  • HA2:R121K
  • HA2:G155E
  • HA2:D160N

    • M1

  • M1:V219I

    • M2

  • M2:P25L
  • M2:S31N
  • M2:L54F
  • M2:N82S
  • M2:D88A

    • NA

  • NA:L81P
  • NA:N93G
  • NA:P126L
  • NA:D147N
  • NA:V194I
  • NA:I215V
  • NA:K220N
  • NA:E221D
  • NA:S245N
  • NA:S247T
  • NA:H264N
  • NA:T267K
  • NA:L285P
  • NA:V303I
  • NA:Y310H
  • NA:S315R
  • NA:N329S
  • NA:D339N
    • Deletions
    None
    Insertions
    None