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Influenza A/H1N1pdm
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GS_00GDW7G.1
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Display Name: Canada/GS_00GDW7G.1/2025-11-01
F. Maguire,
N. Waglechner,
P. Aftanas,
K. Katz,
R. Kozak,
H. Li,
X. Li,
C. Vermeiren,
E. Xiong &
S. Mubareka
Submission details
Submission ID
PX671927.1.seg4/PX671928.1.seg5/PX671929.1.seg6/PX671930.1.seg7/PX671931.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-12-13 05:42:12 UTC
Date released
2025-12-13 05:42:47 UTC
Authors
Author affiliations
Shared Hospital Laboratory, Microbiology
INSDC
Bioproject accession
PRJNA1377212
INSDC accession seg4
PX671927.1
INSDC accession seg5
PX671928.1
INSDC accession seg6
PX671929.1
INSDC accession seg7
PX671930.1
INSDC accession seg8
PX671931.1
NCBI release date
2025-12-09
Clade
Clade HA
6B.1A.5a.2a.1
Clade NA
D
Alignment states and QC metrics seg4
Completeness seg4
51.66%
Length seg4
905
Total ambiguous nucs seg4
0
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
62
Total unknown nucs seg4
0
Alignment states and QC metrics seg5
Completeness seg5
71.88%
Length seg5
1398
Total ambiguous nucs seg5
0
Total deleted nucs seg5
0
Total frame shifts seg5
0
Total inserted nucs seg5
0
Total SNPs seg5
36
Total unknown nucs seg5
322
Alignment states and QC metrics seg6
Completeness seg6
94.91%
Length seg6
1360
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
21
Total unknown nucs seg6
0
Alignment states and QC metrics seg7
Completeness seg7
100.00%
Length seg7
982
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
0
Total SNPs seg7
32
Total unknown nucs seg7
0
Alignment states and QC metrics seg8
Completeness seg8
100.00%
Length seg8
863
Total ambiguous nucs seg8
0
Total deleted nucs seg8
0
Total frame shifts seg8
0
Total inserted nucs seg8
0
Total SNPs seg8
35
Total unknown nucs seg8
0
Sample details
Collection country
Canada
Collection subdivision level 1
Toronto
Collection date
2025-11-01
Isolate name
A/Toronto/ON-SHL-FLUA-2025-00041/2025
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC seg4
Subtype seg4
H1
INSDC seg6
Subtype seg6
N1
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg4
seg4:
G
739
A
seg4:
A
742
C
seg4:
G
776
A
seg4:
A
809
T
seg4:
T
820
C
seg4:
A
827
G
seg4:
G
837
A
seg4:
G
847
A
seg4:
A
849
G
seg4:
T
851
A
seg4:
A
900
G
seg4:
A
911
G
seg4:
G
950
A
seg4:
A
954
G
seg4:
A
968
G
seg4:
A
974
G
seg4:
A
975
G
seg4:
A
986
G
Show more
seg5
seg5:
C
87
T
seg5:
A
97
G
seg5:
C
141
A
seg5:
C
519
T
seg5:
A
522
G
seg5:
G
546
A
seg5:
G
549
A
seg5:
A
570
T
seg5:
C
591
A
seg5:
G
648
A
seg5:
G
649
A
seg5:
G
756
A
seg5:
G
864
C
seg5:
A
876
G
seg5:
G
900
A
seg5:
C
930
T
seg5:
C
963
T
seg5:
T
969
C
Show more
seg6
seg6:
C
285
T
seg6:
A
392
G
seg6:
T
413
C
seg6:
C
452
A
seg6:
G
607
A
seg6:
G
659
A
seg6:
C
728
A
seg6:
G
748
A
seg6:
A
785
G
seg6:
T
799
C
seg6:
A
818
G
seg6:
C
893
T
seg6:
G
914
T
seg6:
C
929
T
seg6:
G
950
A
seg6:
T
1016
C
seg6:
A
1049
G
seg6:
C
1187
T
Show more
seg7
seg7:
G
48
A
seg7:
G
75
A
seg7:
T
123
C
seg7:
C
124
A
seg7:
G
238
A
seg7:
G
258
A
seg7:
A
293
G
seg7:
G
306
A
seg7:
G
339
A
seg7:
G
342
A
seg7:
C
375
A
seg7:
G
414
A
seg7:
T
432
C
seg7:
G
441
T
seg7:
G
492
A
seg7:
C
507
A
seg7:
A
574
G
seg7:
C
622
A
Show more
seg8
seg8:
C
6
A
seg8:
C
42
T
seg8:
C
54
T
seg8:
T
99
C
seg8:
C
108
A
seg8:
T
159
C
seg8:
G
163
A
seg8:
C
192
T
seg8:
C
204
T
seg8:
A
226
T
seg8:
A
238
G
seg8:
G
250
A
seg8:
C
264
T
seg8:
C
268
A
seg8:
C
315
T
seg8:
A
367
G
seg8:
A
375
T
seg8:
A
391
G
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
E
224
A
HA1:
V
250
A
HA1:
A
256
T
HA1:
R
259
K
HA1:
N
260
E
HA1:
T
277
A
HA1:
I
295
V
HA1:
K
302
E
HA1:
K
308
R
HA1:
I
321
V
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
M1
M1:
L
42
I
M1:
V
80
I
M1:
K
98
R
M1:
M
192
V
M1:
Q
208
K
M1:
K
230
R
M2
M2:
R
18
K
M2:
D
21
G
M2:
S
23
N
M2:
I
28
T
NA
NA:
P
93
S
NA:
S
200
N
NA:
S
247
N
NA:
I
264
T
NA:
M
314
I
NA:
V
453
M
NEP
NEP:
D
2
E
NEP:
M
14
T
NEP:
N
29
S
NEP:
T
48
A
NEP:
M
83
I
NP
NP:
I
33
V
NP:
V
217
I
NP:
V
425
I
NS1
NS1:
D
2
E
NS1:
E
55
K
NS1:
T
76
S
NS1:
T
80
A
NS1:
V
84
I
NS1:
L
90
I
NS1:
I
123
V
NS1:
E
125
D
NS1:
K
131
E
NS1:
A
155
T
NS1:
P
164
S
NS1:
N
205
S
Deletions
None
Insertions
None
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