GenSpectrum
Organisms
Influenza B/Victoria
GenSpectrum
Organisms
Influenza B/Victoria
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Dengue 2
Dengue 3
Dengue 4
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
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Influenza B/Victoria
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GS_00GDVRE.1
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Display Name: USA/GS_00GDVRE.1/2025-11-24
A. P. Rothstein,
G. Muir,
A. Sum,
A. Simas,
B. Lu,
B. Girinathan,
H. Mammadova,
P. Leeson,
A. M. Plocik &
D. Gratalo
Submission details
Submission ID
PX696010.1.seg4/PX696012.1.seg5/PX696011.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-12-13 04:19:52 UTC
Date released
2025-12-13 04:20:21 UTC
Authors
Author affiliations
Ginkgo Bioworks, Ginkgo Biosecurity
Clade
Clade HA
V1A.3a.2
Clade NA
B.8
Alignment states and QC metrics seg4
Completeness seg4
98.46%
Length seg4
1847
Total ambiguous nucs seg4
0
Total deleted nucs seg4
9
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
57
Total unknown nucs seg4
0
Alignment states and QC metrics seg5
Completeness seg5
100.00%
Length seg5
1815
Total ambiguous nucs seg5
0
Total deleted nucs seg5
0
Total frame shifts seg5
0
Total inserted nucs seg5
65
Total SNPs seg5
35
Total unknown nucs seg5
0
Alignment states and QC metrics seg6
Completeness seg6
100.00%
Length seg6
1527
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
126
Total SNPs seg6
32
Total unknown nucs seg6
0
Sample details
Collection country
USA
Collection subdivision level 1
New Jersey
Collection date
2025-11-24
Isolate name
B/New Jersey/GKISBBBI18162/2025
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession seg4
PX696010.1
INSDC accession seg5
PX696012.1
INSDC accession seg6
PX696011.1
NCBI release date
2025-12-12
INSDC seg4
Lineage seg4
vic
Nucleotide mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
seg4
seg4:
G
39
A
seg4:
C
188
T
seg4:
C
252
A
seg4:
C
270
T
seg4:
C
276
A
seg4:
G
297
A
seg4:
G
312
T
seg4:
A
318
G
seg4:
A
351
G
seg4:
C
375
T
seg4:
C
378
T
seg4:
A
427
G
seg4:
A
435
G
seg4:
C
441
T
seg4:
T
444
C
seg4:
T
456
C
seg4:
G
457
A
seg4:
A
462
T
Show more
seg5
seg5:
C
3
T
seg5:
T
46
C
seg5:
A
55
G
seg5:
C
93
T
seg5:
A
121
G
seg5:
C
178
T
seg5:
A
224
G
seg5:
A
235
G
seg5:
G
244
A
seg5:
T
298
C
seg5:
C
313
T
seg5:
G
361
A
seg5:
A
373
G
seg5:
C
380
T
seg5:
G
451
A
seg5:
A
454
G
seg5:
C
523
T
seg5:
C
608
T
Show more
seg6
seg6:
T
9
C
seg6:
C
125
A
seg6:
T
134
C
seg6:
T
212
C
seg6:
A
358
G
seg6:
C
394
T
seg6:
C
399
T
seg6:
A
504
G
seg6:
C
519
T
seg6:
C
534
T
seg6:
T
552
C
seg6:
A
660
C
seg6:
C
663
T
seg6:
T
714
A
seg6:
C
849
T
seg6:
T
879
C
seg6:
T
885
G
seg6:
A
945
G
Show more
Deletions
seg4:562-570
Insertions
ins_seg5:0:ATTTTCTTGTGAACTCCA, ins_seg5:1750:CGTTTGGAATATGGGTGTTTATTCTCATTAAAATAAATATAAAAAAT, ins_seg6:0:ATCTTCTCAAAACTGAAGCAAATAGGCCAAAATGAACA, ins_seg6:1401:TGGGGGAGTGGTTAAGTCTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTATCCTTACTAAACTTAATTGTTTCTGAAAAAT
Amino acid mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
HA1
HA1:
T
37
I
HA1:
I
117
V
HA1:
A
127
T
HA1:
E
128
D
HA1:
K
136
E
HA1:
P
144
L
HA1:
N
150
K
HA1:
G
184
E
HA1:
N
197
E
HA1:
A
202
V
HA1:
K
203
R
HA1:
R
279
K
HA2
HA2:
A
29
T
HA2:
V
217
I
NA
NA:
P
42
Q
NA:
I
45
T
NA:
V
71
A
NA:
I
120
V
NA:
K
220
N
NA:
S
295
R
NA:
N
340
D
NA:
K
343
E
NA:
E
358
K
NA:
D
384
G
NA:
A
395
V
NA:
S
397
N
NA:
V
401
I
NA:
K
404
R
NP
NP:
I
9
M
NP:
T
22
I
NP:
T
66
A
NP:
V
453
A
NP:
K
502
Q
Deletions
HA1:162-164
Insertions
None
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