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Browse data
GS_00GC6WV.1
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Display Name: Hong_Kong/GS_00GC6WV.1/2025-08-11
B. J. Cowling,
N. H. L. Leung,
S. M. S. Cheng &
M. Peiris
Submission details
Submission ID
PX599020.1.seg4/PX599023.1.seg5/PX599022.1.seg6/PX599021.1.seg7/PX599024.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-11-26 05:05:34 UTC
Date released
2025-11-26 05:06:36 UTC
Authors
Author affiliations
The University of Hong Kong, WHO Collaborating Centre for Infectious Disease Epidemiology and Control, School of Public Health
Clade
Clade HA
3C.2a1b.2a.2a.3a.1
Clade NA
B.4
Alignment states and QC metrics seg4
Completeness seg4
97.93%
Length seg4
1701
Total ambiguous nucs seg4
0
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
118
Total unknown nucs seg4
0
Alignment states and QC metrics seg5
Completeness seg5
95.59%
Length seg5
1497
Total ambiguous nucs seg5
0
Total deleted nucs seg5
0
Total frame shifts seg5
0
Total inserted nucs seg5
0
Total SNPs seg5
50
Total unknown nucs seg5
0
Alignment states and QC metrics seg6
Completeness seg6
98.19%
Length seg6
1410
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
73
Total unknown nucs seg6
0
Alignment states and QC metrics seg7
Completeness seg7
95.62%
Length seg7
982
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
0
Total SNPs seg7
26
Total unknown nucs seg7
0
Alignment states and QC metrics seg8
Completeness seg8
94.16%
Length seg8
838
Total ambiguous nucs seg8
0
Total deleted nucs seg8
0
Total frame shifts seg8
0
Total inserted nucs seg8
0
Total SNPs seg8
29
Total unknown nucs seg8
0
Sample details
Collection country
Hong Kong
Collection date
2025-08-11
Isolate name
A/Hong Kong/EPI1231/2025
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession seg4
PX599020.1
INSDC accession seg5
PX599023.1
INSDC accession seg6
PX599022.1
INSDC accession seg7
PX599021.1
INSDC accession seg8
PX599024.1
NCBI release date
2025-11-24
INSDC seg4
Subtype seg4
H3
INSDC seg6
Subtype seg6
N2
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg4
seg4:
A
24
G
seg4:
T
42
A
seg4:
G
56
T
seg4:
C
72
A
seg4:
T
74
A
seg4:
C
77
T
seg4:
C
89
T
seg4:
G
155
A
seg4:
A
163
G
seg4:
C
189
T
seg4:
G
199
A
seg4:
C
203
A
seg4:
C
208
T
seg4:
G
213
A
seg4:
G
214
A
seg4:
G
222
A
seg4:
A
250
G
seg4:
A
251
G
Show more
seg5
seg5:
G
96
A
seg5:
G
135
A
seg5:
G
207
A
seg5:
G
219
A
seg5:
C
249
T
seg5:
A
345
C
seg5:
A
351
G
seg5:
G
390
A
seg5:
G
432
T
seg5:
G
436
T
seg5:
T
447
C
seg5:
A
451
C
seg5:
C
459
T
seg5:
G
492
A
seg5:
A
513
G
seg5:
T
525
C
seg5:
A
582
C
seg5:
G
606
A
Show more
seg6
seg6:
C
51
A
seg6:
A
60
G
seg6:
T
88
C
seg6:
C
144
T
seg6:
G
195
A
seg6:
C
205
T
seg6:
T
245
C
seg6:
G
270
A
seg6:
A
280
G
seg6:
A
281
G
seg6:
T
303
C
seg6:
C
345
A
seg6:
C
380
T
seg6:
G
408
A
seg6:
C
429
T
seg6:
G
442
A
seg6:
G
459
A
seg6:
T
465
C
Show more
seg7
seg7:
A
37
T
seg7:
C
188
T
seg7:
G
205
A
seg7:
G
214
T
seg7:
A
241
G
seg7:
T
292
C
seg7:
T
298
C
seg7:
G
328
A
seg7:
A
466
G
seg7:
A
481
G
seg7:
C
493
T
seg7:
A
517
G
seg7:
A
637
G
seg7:
A
658
G
seg7:
G
680
A
seg7:
C
697
T
seg7:
T
703
C
seg7:
C
787
T
Show more
seg8
seg8:
C
53
T
seg8:
G
102
A
seg8:
A
104
C
seg8:
C
116
T
seg8:
C
123
A
seg8:
T
125
C
seg8:
T
134
C
seg8:
G
192
T
seg8:
T
205
C
seg8:
T
218
C
seg8:
A
238
G
seg8:
T
271
C
seg8:
C
275
G
seg8:
G
398
A
seg8:
G
416
A
seg8:
G
430
A
seg8:
A
435
G
seg8:
A
442
G
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
L
3
I
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
K
HA1:
D
53
N
HA1:
E
62
G
HA1:
T
65
K
HA1:
K
83
E
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
96
S
HA1:
N
121
K
HA1:
S
124
N
HA1:
T
131
K
HA1:
S
138
A
HA1:
R
142
G
HA1:
N
144
S
Show more
HA2
HA2:
V
18
M
HA2:
I
32
R
HA2:
N
46
D
HA2:
N
49
S
HA2:
I
77
V
HA2:
R
121
K
HA2:
G
155
E
HA2:
D
160
N
HA2:
I
193
M
HA2:
V
200
I
M1
M1:
V
219
I
M2
M2:
P
25
L
M2:
S
31
N
M2:
N
82
S
NA
NA:
L
81
P
NA:
N
93
G
NA:
P
126
L
NA:
D
147
N
NA:
H
184
Y
NA:
V
194
I
NA:
I
215
V
NA:
K
220
N
NA:
E
221
D
NA:
S
245
N
NA:
S
247
T
NA:
T
267
K
NA:
L
285
P
NA:
V
303
I
NA:
Y
310
H
NA:
S
315
R
NA:
N
329
S
NA:
D
339
N
Show more
NP
NP:
A
131
S
NP:
I
136
L
NP:
V
197
I
NP:
R
236
K
NP:
T
472
A
NS1
NS1:
E
26
N
NS1:
L
33
I
NS1:
A
56
S
NS1:
V
60
A
NS1:
E
71
G
NS1:
V
82
A
NS1:
M
124
I
NS1:
S
135
N
NS1:
I
137
V
NS1:
D
139
G
NS1:
I
171
V
NS1:
K
221
E
NS1:
K
229
E
SigPep
SigPep:
T
3
A
SigPep:
Y
9
N
Deletions
None
Insertions
None
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