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GS_00G8K73.1
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Display Name: Cote_d'Ivoire/GS_00G8K73.1/2024-08-06
L. Doumbia,
L. Thirion,
A. Dubot-Peres,
X. de Lamballerie,
G. Piorkowski,
R. Klitting,
R. Amaral,
L. Pezzi,
N. Ayhan,
S. Marquine,
T. Canivez,
M. Geulen,
L. Bosio,
M. Peden,
G. Durand &
G. Grard
Submission details
Submission ID
PX460267.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-10-21 02:57:35 UTC
Date released
2025-10-21 02:57:54 UTC
Authors
Author affiliations
CNR Arbovirus, CNR Arbovirus
Clade & Lineage
Clade
1III_A.2
Alignment states and QC metrics
Completeness
86.12%
Length
9245
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
773
Total unknown nucs
0
Sample details
Collection country
Cote d'Ivoire
Collection date
2024-08-06
Isolate name
78030-1-0
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PX460267.1
NCBI release date
2025-10-20
NCBI update date
2025-10-20
Nucleotide mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
A
112
G
T
171
G
T
208
C
T
230
A
T
244
C
T
274
C
G
302
A
G
340
A
G
349
A
A
355
G
A
363
G
T
368
C
G
388
A
T
397
C
T
442
C
C
443
T
C
451
A
G
466
A
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Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
C
C:
V
26
G
C:
L
46
M
C:
G
70
S
C:
N
90
S
E
E:
D
37
N
E:
T
88
A
E:
I
114
L
E:
T
161
I
E:
K
203
E
E:
I
293
T
E:
M
297
V
E:
F
337
I
E:
S
338
L
E:
S
339
T
E:
A
369
T
E:
V
380
I
E:
V
428
M
E:
I
436
V
E:
I
439
V
NS1
NS1:
V
93
A
NS1:
S
94
N
NS1:
A
98
T
NS1:
V
128
T
NS1:
N
139
D
NS1:
N
146
D
NS1:
I
162
V
NS1:
V
178
M
NS1:
K
227
R
NS1:
D
278
N
NS1:
T
307
I
NS1:
K
324
R
NS1:
K
347
R
NS2A
NS2A:
S
7
N
NS2A:
I
15
V
NS2A:
L
41
F
NS2A:
T
44
I
NS2A:
A
64
V
NS2A:
K
67
R
NS2A:
R
82
K
NS2A:
V
106
I
NS2A:
A
147
T
NS2A:
T
148
A
NS2A:
V
155
I
NS2A:
F
159
L
NS2A:
H
162
D
NS2A:
I
171
V
NS2A:
I
174
T
NS2A:
L
199
F
NS2B
NS2B:
K
55
R
NS2B:
I
106
V
NS3
NS3:
E
43
D
NS3:
A
91
T
NS3:
A
112
T
NS3:
R
185
K
NS3:
V
221
I
NS3:
Y
349
H
NS3:
V
384
I
NS3:
V
452
A
NS4A
NS4A:
Q
19
L
NS4A:
R
76
K
NS4A:
I
89
M
NS4A:
A
93
V
NS4B
NS4B:
A
18
V
NS4B:
A
19
V
NS4B:
A
27
T
NS4B:
V
31
I
NS4B:
K
212
R
NS5
NS5:
I
34
M
NS5:
L
123
I
NS5:
K
130
R
NS5:
I
181
V
NS5:
Q
195
H
NS5:
V
270
I
NS5:
K
364
R
NS5:
A
365
P
NS5:
R
378
K
NS5:
M
529
I
NS5:
E
559
Q
NS5:
T
565
K
NS5:
N
585
S
prM
prM:
S
15
T
prM:
T
59
A
prM:
E
72
D
prM:
K
118
R
Deletions
None
Insertions
None
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