GS_00G88QD.1

Display Name: Pakistan/GS_00G88QD.1/2025-10-09
U. Fatima

Submission details

Submission ID
PX453772.1
Submitting group
Date submitted
2025-10-15 02:50:43 UTC
Date released
2025-10-15 02:51:01 UTC

Authors

Author affiliations
UVAS, human nutrition and dietetics

Clade & Lineage

Clade
1V_A

Alignment states and QC metrics

Completeness
6.20%
Length
666
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
41
Total unknown nucs
0

Sample details

Collection country
Pakistan
Collection subdivision level 1
punjab,lahore
Collection date
2025-10-09
Isolate name
DENV2_PAKISTAN_lahore_2025

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2025-10-14
NCBI update date
2025-10-14

Nucleotide mutations

Mutations called relative to the NC_001477.1 reference

Substitutions

  • C8285T
  • G8287A
  • A8290G
  • T8293C
  • A8371G
  • G8383A
  • C8434T
  • A8437G
  • G8458A
  • G8506A
  • C8527A
  • C8533G
  • T8539A
  • C8549T
  • A8554C
  • C8572T
  • C8596T
  • C8605T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_001477.1 reference

    Substitutions

    NS5

  • NS5:K364R
  • NS5:R378K
    • Deletions
    None
    Insertions
    None