GS_00G535V.1

USA/GS_00G535V.1/2025-09-05
C. Dohrn & P. C. Gauger

Iowa State University Veterinary Diagnostic Lab, Bioinformatics

Submission details

Submission ID
PX443035.1.seg4/PX443036.1.seg6
Submitting group
Date submitted
2025-10-01 23:01:10 UTC
Date released
2025-10-01 23:11:10 UTC

Clade

Clade HA
unassigned

Sample details

Collection country
USA
Collection subdivision level 1
Iowa
Collection date
2025-09-05
Isolate name
A/swine/Iowa/A02858814/2025

Host

Host

INSDC

INSDC accession seg4
INSDC accession seg6
NCBI release date
2025-10-01

INSDC seg4

subtype_seg4
H1

INSDC seg6

subtype_seg6
N1

Alignment and QC

Length seg4
1701 (97.1%)
Total SNPs seg4
187

Nucleotide mutations

Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

seg4

  • G27A
  • G36A
  • T41C
  • G57A
  • C62T
  • A71C
  • C76A
  • T78A
  • A110T
  • T116C
  • A136G
  • T161C
  • G174A
  • C185T
  • G188A
  • C197T
  • C215T
  • T219C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

HA1

  • HA1:T2K
  • HA1:L3I
  • HA1:K22R
  • HA1:D35N
  • HA1:I61L
  • HA1:E68D
  • HA1:S71A
  • HA1:T72R
  • HA1:T82N
  • HA1:S84N
  • HA1:D86N
  • HA1:D97N
  • HA1:R113K
  • HA1:N125K
  • HA1:D127E
  • HA1:S128T
  • HA1:A141T
  • HA1:K142N

HA2

  • HA2:V18I
  • HA2:I45V
  • HA2:E47G
  • HA2:V66I
  • HA2:N71S
  • HA2:K75R
  • HA2:L89I
  • HA2:N117T
  • HA2:K121R
  • HA2:N146D
  • HA2:V176I
  • HA2:I220V

SigPep

  • SigPep:A3T
  • SigPep:V6I
  • SigPep:A13T
Deletions
N/A
Insertions
N/A