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GS_00F3HQF.1
Download
Download FASTA
Download metadata TSV
Display Name: USA/GS_00F3HQF.1/2025-07-14
A. USDA Swine Surveillance,
K. Lin &
S. Clore
Submission details
Submission ID
PX068524.1.seg4/PX068525.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-08-12 17:03:59 UTC
Date released
2025-08-13 09:08:12 UTC
Authors
Author affiliations
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Clade
Clade HA
unassigned
Clade NA
unassigned
Alignment states and QC metrics seg4
Completeness seg4
97.93%
Length seg4
1701
Total ambiguous nucs seg4
0
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
116
Total unknown nucs seg4
0
Alignment states and QC metrics seg6
Completeness seg6
98.19%
Length seg6
1410
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
149
Total unknown nucs seg6
0
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-07-14
Isolate name
A/swine/Minnesota/A02858718/2025
Host
Host name scientific
Sus scrofa
Host taxon id
9823
INSDC
INSDC accession seg4
PX068524.1
INSDC accession seg6
PX068525.1
NCBI release date
2025-08-04
INSDC seg4
Subtype seg4
H3
INSDC seg6
Subtype seg6
N2
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg4
seg4:
T
42
C
seg4:
A
45
G
seg4:
G
56
C
seg4:
C
76
A
seg4:
C
77
T
seg4:
G
78
A
seg4:
A
80
T
seg4:
G
91
A
seg4:
C
94
T
seg4:
G
113
A
seg4:
A
125
G
seg4:
A
150
C
seg4:
A
165
G
seg4:
T
173
C
seg4:
A
206
C
seg4:
G
214
A
seg4:
A
223
G
seg4:
A
248
G
Show more
seg6
seg6:
G
30
A
seg6:
C
50
T
seg6:
T
55
G
seg6:
C
66
T
seg6:
T
70
C
seg6:
C
72
T
seg6:
T
88
C
seg6:
A
91
C
seg6:
A
102
G
seg6:
A
116
G
seg6:
G
117
A
seg6:
A
120
G
seg6:
T
121
C
seg6:
T
123
C
seg6:
A
126
T
seg6:
T
128
G
seg6:
C
136
T
seg6:
G
153
A
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
P
4
H
HA1:
G
5
S
HA1:
S
9
N
HA1:
T
10
M
HA1:
I
29
L
HA1:
I
34
V
HA1:
G
50
E
HA1:
D
53
G
HA1:
E
62
K
HA1:
G
78
D
HA1:
K
82
N
HA1:
K
83
R
HA1:
Y
94
H
HA1:
N
121
T
HA1:
D
122
N
HA1:
S
124
N
HA1:
T
135
A
HA1:
K
158
Q
Show more
HA2
HA2:
I
32
R
HA2:
A
43
S
HA2:
N
46
D
HA2:
I
77
V
HA2:
R
121
K
HA2:
G
181
E
NA
NA:
T
16
I
NA:
S
18
A
NA:
F
23
L
NA:
I
30
L
NA:
K
38
R
NA:
Y
40
H
NA:
E
41
D
NA:
F
42
C
NA:
P
45
S
NA:
M
51
V
NA:
L
52
F
NA:
I
62
K
NA:
I
73
V
NA:
L
81
P
NA:
P
126
L
NA:
V
143
R
NA:
K
172
R
NA:
V
194
I
Show more
SigPep
SigPep:
Y
9
H
SigPep:
I
10
V
Deletions
None
Insertions
None
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