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Dengue 4
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GS_00F3D5Q.1
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Download FASTA
Download metadata TSV
Display Name: USA/GS_00F3D5Q.1/2025-05-26
A. USDA Swine Influenza Surveillance &
M. Sturos
Submission details
Submission ID
PX060468.1.seg4/PX060469.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-08-12 17:03:59 UTC
Date released
2025-08-13 09:07:40 UTC
Authors
Author affiliations
USDA
Clade
Clade HA
unassigned
Clade NA
unassigned
Alignment states and QC metrics seg4
Completeness seg4
97.70%
Length seg4
1701
Total ambiguous nucs seg4
4
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
135
Total unknown nucs seg4
0
Alignment states and QC metrics seg6
Completeness seg6
98.19%
Length seg6
1410
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
151
Total unknown nucs seg6
0
Sample details
Collection country
USA
Collection date
2025-05-26
Isolate name
A/swine/North Carolina/A02978929/2025
Host
Host name scientific
Sus scrofa
Host taxon id
9823
INSDC
INSDC accession seg4
PX060468.1
INSDC accession seg6
PX060469.1
NCBI release date
2025-08-01
INSDC seg4
Subtype seg4
H3
INSDC seg6
Subtype seg6
N2
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg4
seg4:
G
23
A
seg4:
T
26
C
seg4:
C
34
T
seg4:
T
42
C
seg4:
C
44
A
seg4:
G
52
A
seg4:
T
60
C
seg4:
A
80
T
seg4:
G
91
A
seg4:
C
94
T
seg4:
G
113
A
seg4:
A
125
G
seg4:
A
129
C
seg4:
A
140
G
seg4:
A
156
G
seg4:
T
185
C
seg4:
G
199
A
seg4:
C
202
T
Show more
seg6
seg6:
G
30
A
seg6:
T
41
C
seg6:
T
45
G
seg6:
C
50
T
seg6:
T
55
G
seg6:
C
57
T
seg6:
T
70
C
seg6:
C
72
T
seg6:
A
79
G
seg6:
T
88
C
seg6:
A
91
G
seg6:
T
96
A
seg6:
G
100
A
seg6:
A
120
G
seg6:
T
121
C
seg6:
A
126
T
seg6:
T
128
G
seg6:
C
132
T
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
S
9
N
HA1:
T
10
M
HA1:
N
22
H
HA1:
I
25
M
HA1:
N
31
D
HA1:
S
45
N
HA1:
S
46
F
HA1:
G
50
E
HA1:
D
53
N
HA1:
H
56
Y
HA1:
E
62
G
HA1:
F
79
L
HA1:
K
82
N
HA1:
Y
94
H
HA1:
N
96
D
HA1:
D
122
K
HA1:
N
133
D
HA1:
T
135
A
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
F
63
Y
HA2:
L
102
M
HA2:
R
121
K
HA2:
D
145
N
HA2:
G
181
E
HA2:
I
193
M
HA2:
R
216
K
NA
NA:
V
13
A
NA:
T
16
I
NA:
S
18
A
NA:
F
23
L
NA:
I
26
V
NA:
I
30
V
NA:
V
33
I
NA:
Y
40
H
NA:
E
41
D
NA:
F
42
C
NA:
P
45
H
NA:
L
52
I
NA:
E
54
K
NA:
I
62
K
NA:
I
73
V
NA:
L
81
P
NA:
A
82
S
NA:
T
95
A
Show more
SigPep
SigPep:
A
6
V
SigPep:
Y
9
Q
SigPep:
C
12
Y
SigPep:
F
15
L
Deletions
None
Insertions
None
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