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GS_00F3CRJ.1
Download
Download FASTA
Download metadata TSV
Display Name: USA/GS_00F3CRJ.1/2025-07-03
A. USDA Swine Surveillance,
K. Lin &
S. Clore
Submission details
Submission ID
PV996934.1.seg4/PV996935.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-08-12 17:03:59 UTC
Date released
2025-08-13 09:07:40 UTC
Authors
Author affiliations
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Clade
Clade HA
unassigned
Clade NA
unassigned
Alignment states and QC metrics seg4
Completeness seg4
97.93%
Length seg4
1701
Total ambiguous nucs seg4
0
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
223
Total unknown nucs seg4
0
Alignment states and QC metrics seg6
Completeness seg6
98.19%
Length seg6
1410
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
153
Total unknown nucs seg6
0
Sample details
Collection country
USA
Collection subdivision level 1
Oklahoma
Collection date
2025-07-03
Isolate name
A/swine/Oklahoma/A02858714/2025
Host
Host name scientific
Sus scrofa
Host taxon id
9823
INSDC
INSDC accession seg4
PV996934.1
INSDC accession seg6
PV996935.1
NCBI release date
2025-07-28
INSDC seg4
Subtype seg4
H3
INSDC seg6
Subtype seg6
N2
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg4
seg4:
G
38
T
seg4:
A
43
G
seg4:
T
47
A
seg4:
T
55
A
seg4:
G
57
A
seg4:
T
59
C
seg4:
T
61
C
seg4:
G
63
T
seg4:
A
71
C
seg4:
T
74
C
seg4:
C
77
T
seg4:
A
80
G
seg4:
A
82
G
seg4:
G
84
T
seg4:
C
94
T
seg4:
A
98
G
seg4:
G
101
A
seg4:
T
110
G
Show more
seg6
seg6:
G
30
A
seg6:
T
42
C
seg6:
C
48
T
seg6:
A
49
C
seg6:
C
50
T
seg6:
T
55
G
seg6:
C
57
T
seg6:
A
58
G
seg6:
C
59
T
seg6:
C
69
T
seg6:
T
70
C
seg6:
C
72
T
seg6:
A
79
G
seg6:
C
84
T
seg6:
C
87
T
seg6:
T
88
C
seg6:
A
91
G
seg6:
A
102
G
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
K
2
N
HA1:
N
6
S
HA1:
D
7
Y
HA1:
T
10
M
HA1:
I
25
L
HA1:
N
31
D
HA1:
T
48
K
HA1:
G
50
E
HA1:
D
53
S
HA1:
Q
57
K
HA1:
E
62
K
HA1:
Q
75
H
HA1:
G
78
D
HA1:
N
81
D
HA1:
K
82
R
HA1:
K
83
T
HA1:
K
92
T
HA1:
N
96
D
Show more
HA2
HA2:
I
32
T
HA2:
N
49
T
HA2:
L
55
V
HA2:
I
56
V
HA2:
G
57
K
HA2:
S
71
T
HA2:
K
82
R
HA2:
I
89
V
HA2:
L
167
V
HA2:
N
168
Q
HA2:
E
177
Q
HA2:
S
180
L
HA2:
W
185
L
HA2:
V
200
A
HA2:
A
201
V
NA
NA:
T
16
L
NA:
S
18
A
NA:
T
19
V
NA:
F
23
L
NA:
I
26
V
NA:
I
30
V
NA:
Q
39
R
NA:
Y
40
H
NA:
E
41
N
NA:
F
42
C
NA:
N
43
D
NA:
P
45
V
NA:
M
51
V
NA:
L
52
I
NA:
I
62
K
NA:
L
81
P
NA:
D
127
E
NA:
V
143
K
Show more
SigPep
SigPep:
L
7
F
SigPep:
Y
9
C
SigPep:
L
13
Q
SigPep:
V
14
I
SigPep:
F
15
S
SigPep:
A
16
S
Deletions
None
Insertions
None
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