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GS_00F2NLL.1
Download
Download FASTA
Download metadata TSV
Display Name: USA/GS_00F2NLL.1/2025-06-30
A. USDA Swine Surveillance,
K. Lin &
S. Clore
Submission details
Submission ID
PV983778.1.seg4/PV983779.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-08-12 17:03:59 UTC
Date released
2025-08-13 08:15:54 UTC
Authors
Author affiliations
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Clade
Clade HA
3C.2a1b.2a.2a.1
Clade NA
unassigned
Alignment states and QC metrics seg4
Completeness seg4
97.93%
Length seg4
1701
Total ambiguous nucs seg4
0
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
130
Total unknown nucs seg4
0
Alignment states and QC metrics seg6
Completeness seg6
98.19%
Length seg6
1410
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
148
Total unknown nucs seg6
0
Sample details
Collection country
USA
Collection subdivision level 1
Iowa
Collection date
2025-06-30
Isolate name
A/swine/Iowa/A02858706/2025
Host
Host name scientific
Sus scrofa
Host taxon id
9823
INSDC
INSDC accession seg4
PV983778.1
INSDC accession seg6
PV983779.1
NCBI release date
2025-07-24
INSDC seg4
Subtype seg4
H3
INSDC seg6
Subtype seg6
N2
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg4
seg4:
G
38
A
seg4:
T
42
A
seg4:
G
56
T
seg4:
T
58
C
seg4:
C
72
A
seg4:
T
74
A
seg4:
C
77
T
seg4:
C
89
T
seg4:
G
95
A
seg4:
A
128
G
seg4:
G
155
A
seg4:
C
161
T
seg4:
A
163
G
seg4:
T
173
C
seg4:
C
189
T
seg4:
G
199
A
seg4:
C
203
A
seg4:
C
208
T
Show more
seg6
seg6:
C
16
A
seg6:
G
21
A
seg6:
G
30
A
seg6:
A
49
G
seg6:
C
50
T
seg6:
T
55
G
seg6:
C
66
T
seg6:
T
67
C
seg6:
T
70
C
seg6:
C
72
T
seg6:
C
87
T
seg6:
T
88
C
seg6:
A
91
G
seg6:
A
93
G
seg6:
T
101
C
seg6:
T
106
C
seg6:
T
111
C
seg6:
T
121
C
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
L
3
I
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
E
HA1:
D
53
G
HA1:
E
62
G
HA1:
K
83
E
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
121
K
HA1:
D
122
S
HA1:
T
131
K
HA1:
N
133
D
HA1:
S
138
A
HA1:
K
140
I
HA1:
R
142
G
HA1:
N
144
S
Show more
HA2
HA2:
I
32
S
HA2:
N
46
D
HA2:
I
77
V
HA2:
R
121
K
HA2:
K
123
R
HA2:
G
155
E
HA2:
D
160
N
HA2:
K
174
R
HA2:
I
193
M
HA2:
V
200
I
NA
NA:
Q
5
K
NA:
T
16
V
NA:
S
18
A
NA:
F
22
L
NA:
F
23
L
NA:
I
30
V
NA:
V
33
A
NA:
Y
40
H
NA:
E
41
D
NA:
F
42
C
NA:
P
45
S
NA:
N
47
S
NA:
M
51
I
NA:
L
52
F
NA:
I
62
K
NA:
I
73
L
NA:
L
81
P
NA:
N
86
I
Show more
SigPep
SigPep:
Y
9
N
SigPep:
V
14
A
Deletions
None
Insertions
None
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