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Influenza B/Victoria
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GS_00ETGCT.1
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Display Name: USA/GS_00ETGCT.1/2025-07-01
A. P. Rothstein,
S. Collins,
G. Muir,
A. Simas,
B. Lu,
B. Cosca,
B. Girinathan,
P. Leeson,
A. M. Plocik &
B. Simen
Submission details
Submission ID
PX103273.1.seg4/PX103275.1.seg6/PX103274.1.seg7/PX103276.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-08-08 16:48:21 UTC
Date released
2025-08-08 16:48:50 UTC
Authors
Author affiliations
Ginkgo Bioworks, Ginkgo Biosecurity
Clade
Clade HA
V1A.3a.2
Clade NA
B.8
Alignment states and QC metrics seg4
Completeness seg4
98.46%
Length seg4
1847
Total ambiguous nucs seg4
0
Total deleted nucs seg4
9
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
57
Total unknown nucs seg4
0
Alignment states and QC metrics seg6
Completeness seg6
100.00%
Length seg6
1528
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
127
Total SNPs seg6
31
Total unknown nucs seg6
0
Alignment states and QC metrics seg7
Completeness seg7
100.00%
Length seg7
1155
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
8
Total SNPs seg7
15
Total unknown nucs seg7
0
Alignment states and QC metrics seg8
Completeness seg8
99.62%
Length seg8
1083
Total ambiguous nucs seg8
0
Total deleted nucs seg8
0
Total frame shifts seg8
0
Total inserted nucs seg8
21
Total SNPs seg8
20
Total unknown nucs seg8
0
Sample details
Collection country
USA
Collection subdivision level 1
New York
Collection date
2025-07-01
Isolate name
B/New York/GKISBBBG64249/2025
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession seg4
PX103273.1
INSDC accession seg6
PX103275.1
INSDC accession seg7
PX103274.1
INSDC accession seg8
PX103276.1
NCBI release date
2025-08-08
INSDC seg4
Lineage seg4
vic
Nucleotide mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
seg4
seg4:
G
39
A
seg4:
C
188
T
seg4:
C
252
A
seg4:
C
270
T
seg4:
C
276
A
seg4:
G
297
A
seg4:
G
312
T
seg4:
A
318
G
seg4:
A
351
G
seg4:
C
375
T
seg4:
C
378
T
seg4:
A
427
G
seg4:
A
435
G
seg4:
C
441
T
seg4:
T
444
C
seg4:
T
456
C
seg4:
G
457
A
seg4:
A
462
T
Show more
seg6
seg6:
T
9
C
seg6:
C
125
A
seg6:
T
134
C
seg6:
T
212
C
seg6:
A
358
G
seg6:
C
394
T
seg6:
C
399
T
seg6:
A
504
G
seg6:
C
519
T
seg6:
C
534
T
seg6:
A
660
C
seg6:
T
714
A
seg6:
C
849
T
seg6:
T
879
C
seg6:
T
885
G
seg6:
A
945
G
seg6:
C
954
T
seg6:
C
987
T
Show more
seg7
seg7:
C
33
T
seg7:
C
46
T
seg7:
A
83
G
seg7:
T
113
C
seg7:
T
125
A
seg7:
G
316
A
seg7:
A
419
G
seg7:
G
482
A
seg7:
G
500
T
seg7:
G
521
A
seg7:
G
536
A
seg7:
A
566
G
seg7:
C
656
T
seg7:
A
919
G
seg7:
A
967
G
seg8
seg8:
G
26
A
seg8:
A
118
G
seg8:
T
163
C
seg8:
G
190
A
seg8:
G
257
A
seg8:
A
336
T
seg8:
T
341
C
seg8:
A
352
C
seg8:
T
355
C
seg8:
G
376
A
seg8:
T
391
C
seg8:
C
419
T
seg8:
C
604
T
seg8:
A
610
T
seg8:
C
632
T
seg8:
G
661
A
seg8:
T
775
C
seg8:
C
882
T
seg8:
A
950
G
seg8:
T
963
C
Deletions
seg4:562-570
Insertions
ins_seg8:1066:TAAAAATCCTCTTGTTACTAC, ins_seg7:0:TTCTTA, ins_seg7:1147:AA, ins_seg6:0:ATCTTCTCAAAACTGAAGCAAATAGGCCAAAAATGAACA, ins_seg6:1401:TGGGGGAGTGGTTAAGTCTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTATCCTTACTAAACTTAATTGTTTCTGAAAAAT
Amino acid mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
HA1
HA1:
T
37
I
HA1:
I
117
V
HA1:
A
127
T
HA1:
E
128
D
HA1:
K
136
E
HA1:
P
144
L
HA1:
N
150
K
HA1:
G
184
E
HA1:
N
197
E
HA1:
K
203
R
HA1:
R
279
K
M1
M1:
T
15
I
M1:
R
105
K
NA
NA:
P
42
Q
NA:
I
45
T
NA:
V
71
A
NA:
I
120
V
NA:
K
220
N
NA:
S
295
R
NA:
N
340
D
NA:
K
343
E
NA:
E
358
K
NA:
D
384
G
NA:
A
395
V
NA:
S
397
N
NA:
V
401
I
NA:
K
404
R
NEP
NEP:
L
30
S
NEP:
S
93
P
NS1
NS1:
E
76
K
NS1:
E
102
V
NS1:
Y
104
H
NS1:
K
107
N
NS1:
L
130
F
NS1:
H
201
Y
Deletions
HA1:162-164
Insertions
None
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