GS_00ER64P.1

Display Name: Thailand/GS_00ER64P.1/2024-09-19
P. Sittikul, I. Wirasit, K. Taoma, J. Rattanamahaphoom, P. Sriburin, W. Nuprasert, K. Limkittikul, C. Rotejanaprasert & S. Chatchen

Submission details

Submission ID
PV663131.1
Submitting group
Date submitted
2025-07-07 07:58:14 UTC
Date released
2025-07-07 13:06:24 UTC

Authors

Author affiliations
Mahidol university, Department of Tropical Pediatrics, Faculty of Tropical Medicine

Clade & Lineage

Clade
2V_A.2

Alignment states and QC metrics

Completeness
13.85%
Length
1485
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
72
Total unknown nucs
0

Sample details

Collection country
Thailand
Collection subdivision level 1
Bangkok
Collection date
2024-09-19
Isolate name
ID0324

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2025-05-30
NCBI update date
2025-05-30

Nucleotide mutations

Mutations called relative to the NC_001474.2 reference

Substitutions

  • G954A
  • G972A
  • G979A
  • C993T
  • C1002T
  • G1006A
  • T1065C
  • A1080G
  • T1095A
  • T1116C
  • G1122A
  • G1128A
  • T1152C
  • C1155T
  • T1185A
  • A1200G
  • C1255T
  • C1272T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_001474.2 reference

    Substitutions

    E

  • E:M6I
  • E:V15I
  • E:V24I
  • E:N83K
  • E:R120T
  • E:V129I
  • E:I141V
  • E:I164V
  • E:T226K
  • E:G228E
  • E:H346Y
  • E:T478S
    • Deletions
    None
    Insertions
    None