GS_00ER63R.1

Display Name: Thailand/GS_00ER63R.1/2024-09-16
P. Sittikul, I. Wirasit, K. Taoma, J. Rattanamahaphoom, P. Sriburin, W. Nuprasert, K. Limkittikul, C. Rotejanaprasert & S. Chatchen

Submission details

Submission ID
PV663130.1
Submitting group
Date submitted
2025-07-07 07:58:14 UTC
Date released
2025-07-07 13:06:24 UTC

Authors

Author affiliations
Mahidol university, Department of Tropical Pediatrics, Faculty of Tropical Medicine

Clade & Lineage

Clade
2II_F.1.1

Alignment states and QC metrics

Completeness
13.85%
Length
1485
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
104
Total unknown nucs
0

Sample details

Collection country
Thailand
Collection subdivision level 1
Bangkok
Collection date
2024-09-16
Isolate name
ID0322

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2025-05-30
NCBI update date
2025-05-30

Nucleotide mutations

Mutations called relative to the NC_001474.2 reference

Substitutions

  • C945T
  • G954A
  • T981C
  • T1009C
  • A1011G
  • C1047T
  • A1077G
  • C1086G
  • G1092T
  • T1095C
  • C1101T
  • C1113T
  • T1116C
  • A1131G
  • A1148C
  • C1155T
  • G1170A
  • C1176T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_001474.2 reference

    Substitutions

    E

  • E:M6I
  • E:Q52H
  • E:E71A
  • E:R120T
  • E:V129I
  • E:H149N
  • E:I164V
  • E:N390S
  • E:I462V
  • E:T478S
  • E:I484V
    • Deletions
    None
    Insertions
    None