Display Name: India/GS_00ER3Z1.1/2024-09-27
P. Singh, S. Negi, K. Sharma, R. Khare & A. Bhargava

Submission details

Submission ID
PV554929.1
Date submitted
2025-07-07 07:58:14 UTC
Date released
2025-07-07 13:06:24 UTC

Authors

Author affiliations
Department of Microbiology, All India Institute of Medical Sciences, State Virus Research and Diagnostic Laboratory (VRDL)

Clade & Lineage

Clade
2II_F.1.1

Alignment states and QC metrics

Completeness
98.70%
Length
10584
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
434
Total unknown nucs
0

Sample details

Collection country
India
Collection date
2024-09-27
Isolate name
AIIMSR-DEN-88/2024

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2025-04-29
NCBI update date
2025-04-29

Nucleotide mutations

Mutations called relative to the NC_001474.2 reference

Substitutions

  • G44A
  • C54T
  • A122G
  • C126T
  • G168A
  • A177G
  • G210A
  • T226C
  • A228G
  • G252A
  • C450T
  • T456C
  • C459T
  • C471T
  • C483T
  • G523A
  • T525C
  • C534T
  • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_001474.2 reference

    Substitutions

    C

  • C:K9R
  • E

  • E:M6I
  • E:Q52H
  • E:E71A
  • E:I322V
  • E:N390S
  • NS1

  • NS1:Q98P
  • NS1:K174R
  • NS1:F178S
  • NS1:K272R
  • NS2B

  • NS2B:L21F
  • NS3

  • NS3:M13V
  • NS3:K15R
  • NS3:I140V
  • NS3:R186K
  • NS3:V273I
  • NS3:I333M
  • NS3:R337K
  • NS3:V395I
  • NS3:I461V
  • NS3:I600V
  • NS4A

  • NS4A:R76K
  • NS4B

  • NS4B:F112L
  • NS4B:T244A
  • NS5

  • NS5:V335I
  • NS5:R430G
  • NS5:H513Y
  • NS5:G605V
  • NS5:I637A
  • NS5:Q644K
  • NS5:A648V
  • NS5:S676N
  • NS5:I687V
  • NS5:K800T
  • NS5:A865T
  • prM

  • prM:D29N
  • prM:K52N
  • prM:V120A
  • prM:I127V
  • prM:M135I
  • prM:A152V
  • prM:T162A
  • Deletions
    None
    Insertions
    None