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GS_00EQPXM.1
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Display Name: USA/GS_00EQPXM.1/2024-09-22
M. Mitchell,
O. Tekin &
Y. Dong
Submission details
Submission ID
PQ617150.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-07-07 07:58:14 UTC
Date released
2025-07-07 12:54:19 UTC
Authors
Author affiliations
FLDOH, BPHL
INSDC
Bioproject accession
PRJNA973096
Biosample accession
SAMN44818350
INSDC accession
PQ617150.1
NCBI release date
2024-11-24
NCBI update date
2024-11-24
SRA run accession
SRR31395588
Clade & Lineage
Clade
2III_C.1.2
Alignment states and QC metrics
Completeness
98.83%
Length
10601
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
3
Total SNPs
795
Total unknown nucs
0
Sample details
Collection country
USA
Collection subdivision level 1
FL
Collection date
2024-09-22
Isolate name
DENV-2/USA/FL-BPHL-0169/2024
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Nucleotide mutations
Mutations called relative to the
NC_001474.2
reference
Substitutions
G
111
A
A
122
G
A
125
G
C
126
T
G
168
A
A
186
G
G
213
A
A
219
C
G
246
T
G
252
T
C
264
T
G
294
A
G
297
A
A
309
G
T
312
C
T
330
C
T
333
A
A
383
C
Show more
Deletions
None
Insertions
ins_10392:A, ins_10452:C, ins_10610:A
Amino acid mutations
Mutations called relative to the
NC_001474.2
reference
Substitutions
C
C:
K
9
R
C:
N
10
S
C:
N
79
K
C:
N
96
T
C:
S
101
T
C:
A
102
V
C:
G
103
S
C:
M
104
V
C:
I
106
V
C:
V
112
A
E
E:
M
6
I
E:
R
120
T
E:
V
129
I
E:
I
170
T
E:
N
203
D
E:
V
308
I
E:
D
329
E
E:
M
340
T
E:
S
363
A
E:
I
380
V
E:
T
478
S
E:
I
484
V
E:
V
491
A
NS1
NS1:
M
123
T
NS1:
L
153
M
NS1:
T
164
S
NS1:
K
172
R
NS1:
I
212
M
NS1:
N
222
S
NS1:
I
264
T
NS1:
T
265
A
NS1:
D
281
G
NS2A
NS2A:
V
38
L
NS2A:
R
51
K
NS2A:
T
104
A
NS2A:
V
109
A
NS2A:
I
116
L
NS2A:
M
136
I
NS2A:
L
153
S
NS2A:
V
174
A
NS2A:
T
189
A
NS2A:
T
214
A
NS2B
NS2B:
L
109
V
NS3
NS3:
M
13
V
NS3:
K
28
R
NS3:
K
61
R
NS3:
L
115
I
NS3:
A
120
T
NS3:
I
140
V
NS3:
K
142
R
NS3:
N
175
S
NS3:
R
186
K
NS3:
I
333
M
NS3:
T
399
A
NS3:
K
418
R
NS3:
R
549
K
NS3:
R
561
K
NS4A
NS4A:
D
23
N
NS4A:
A
36
V
NS4A:
Y
41
H
NS4A:
R
76
K
NS4B
NS4B:
L
15
F
NS4B:
A
19
T
NS4B:
Q
22
E
NS4B:
P
23
S
NS4B:
F
112
L
NS4B:
T
151
A
NS4B:
D
156
E
NS4B:
V
175
I
NS5
NS5:
I
135
T
NS5:
V
156
I
NS5:
A
196
T
NS5:
S
225
T
NS5:
R
246
K
NS5:
Y
247
H
NS5:
I
276
V
NS5:
A
317
S
NS5:
K
388
E
NS5:
S
429
G
NS5:
K
437
R
NS5:
E
501
G
NS5:
K
514
R
NS5:
D
521
E
NS5:
S
523
G
NS5:
E
558
K
NS5:
R
596
K
NS5:
V
628
I
Show more
prM
prM:
S
15
G
prM:
M
39
I
prM:
M
83
T
prM:
E
85
D
prM:
V
120
I
prM:
M
135
I
prM:
A
152
T
prM:
T
162
A
Deletions
None
Insertions
None
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