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RSV-A
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GS_00EQNN6.1
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Display Name: Colombia/GS_00EQNN6.1/2024-09-06
E. Murillo,
S. Zuluaga,
A. Barrientos,
J. Gonzalez,
M. Quimbayo &
R. Rojo
Submission details
Submission ID
PQ422930.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-07-07 07:58:14 UTC
Date released
2025-07-07 12:48:39 UTC
Authors
Author affiliations
UNIVERSIDAD DE ANTIOQUIA, Lime
Clade & Lineage
Clade
2II_F.1.1.2
Alignment states and QC metrics
Completeness
23.91%
Length
1516
Total ambiguous nucs
0
Total deleted nucs
1048
Total frame shifts
0
Total inserted nucs
0
Total SNPs
105
Total unknown nucs
0
Sample details
Collection country
Colombia
Collection subdivision level 1
Medellin
Collection date
2024-09-06
Isolate name
DENV2/Cosmopolitan/Med/Col/0240997LIME/2024
Host
Host name scientific
Aedes aegypti
Host taxon id
7159
INSDC
INSDC accession
PQ422930.1
NCBI release date
2024-10-08
NCBI update date
2024-10-08
Nucleotide mutations
Mutations called relative to the
NC_001474.2
reference
Substitutions
C
945
T
G
954
A
G
978
A
T
1009
C
A
1011
G
C
1047
T
A
1050
G
C
1086
G
G
1092
C
T
1095
C
C
1101
T
C
1113
T
T
1116
C
A
1131
G
A
1148
C
G
1170
A
G
1191
A
G
1203
A
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Deletions
2440-3487
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_001474.2
reference
Substitutions
E
E:
M
6
I
E:
Q
52
H
E:
E
71
A
E:
R
120
T
E:
H
149
N
E:
T
226
I
E:
N
390
S
E:
I
462
V
E:
T
478
S
E:
I
484
V
NS1
NS1:
C
4
V
NS1:
V
5
A
Deletions
None
Insertions
None
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