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GS_00EAVK0.1
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Display Name: China/GS_00EAVK0.1/2024-10-28
Y. Feng,
H. Zhong,
M. Jiang &
W. Li
Submission details
Submission ID
PV571641.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-07-07 07:55:25 UTC
Date released
2025-07-07 10:41:07 UTC
Authors
Author affiliations
Sichuan Center for Disease Control and Prevention, Institute of Microbiological Detection and Analyses
Clade & Lineage
Clade
3III_B.3.1
Alignment states and QC metrics
Completeness
97.56%
Length
10570
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
1
Total SNPs
444
Total unknown nucs
123
Sample details
Collection country
China
Collection subdivision level 1
Sichuan
Collection date
2024-10-28
Isolate name
SCDen24-38
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PV571641.1
NCBI release date
2025-05-03
NCBI update date
2025-05-03
Nucleotide mutations
Mutations called relative to the
NC_001475.2
reference
Substitutions
G
65
A
G
112
A
C
203
T
T
235
C
T
250
C
C
256
T
A
265
G
C
289
T
T
295
C
C
334
T
C
358
T
C
383
A
T
496
A
T
556
C
G
565
A
A
655
G
C
676
T
C
826
T
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Deletions
None
Insertions
ins_10436:A
Amino acid mutations
Mutations called relative to the
NC_001475.2
reference
Substitutions
2K
2K:
L
17
M
2K:
T
20
I
C
C:
Q
97
K
E
E:
K
47
R
E:
E
62
K
E:
V
158
I
E:
A
160
V
E:
A
219
T
E:
E
404
A
NS1
NS1:
L
94
I
NS1:
V
174
A
NS1:
L
178
M
NS1:
T
233
S
NS1:
S
290
N
NS2A
NS2A:
L
23
M
NS2A:
V
127
I
NS2A:
V
150
I
NS2B
NS2B:
P
57
A
NS2B:
E
64
D
NS3
NS3:
F
31
L
NS3:
E
43
D
NS3:
T
112
M
NS4A
NS4A:
N
23
S
NS4A:
D
36
H
NS4A:
L
55
F
NS4A:
V
100
I
NS4B
NS4B:
I
115
V
NS4B:
M
151
I
NS4B:
S
157
P
NS4B:
F
160
Y
NS5
NS5:
V
72
I
NS5:
T
188
A
NS5:
L
193
I
NS5:
M
336
I
NS5:
D
435
N
NS5:
I
553
T
NS5:
Q
562
L
NS5:
L
603
V
NS5:
T
629
S
NS5:
L
639
P
NS5:
E
820
D
NS5:
V
830
I
NS5:
I
874
M
Deletions
None
Insertions
None
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