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GS_00EAVH4.1
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Display Name: India/GS_00EAVH4.1/2024-09-27
P. Singh,
S. Negi,
K. Sharma,
R. Khare &
A. Bhargava
Submission details
Submission ID
PV554930.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-07-07 07:55:25 UTC
Date released
2025-07-07 10:41:07 UTC
Authors
Author affiliations
Department of Microbiology, All India Institute of Medical Sciences, State Virus Research and Diagnostic Laboratory (VRDL)
Clade & Lineage
Clade
3III_B.3
Alignment states and QC metrics
Completeness
98.00%
Length
10493
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
1
Total SNPs
279
Total unknown nucs
0
Sample details
Collection country
India
Collection date
2024-09-27
Isolate name
AIIMSR-DEN-89/2024
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PV554930.1
NCBI release date
2025-04-29
NCBI update date
2025-04-29
Nucleotide mutations
Mutations called relative to the
NC_001475.2
reference
Substitutions
G
65
A
C
203
T
C
214
T
T
235
C
T
250
C
C
256
T
A
265
G
C
289
T
T
295
C
G
322
T
C
334
T
C
358
T
A
361
C
C
383
A
G
468
A
T
496
G
T
556
C
G
565
A
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Deletions
75
Insertions
ins_10436:A
Amino acid mutations
Mutations called relative to the
NC_001475.2
reference
Substitutions
2K
2K:
L
17
M
C
C:
Q
97
K
E
E:
E
404
A
NS1
NS1:
K
170
R
NS1:
L
178
M
NS1:
T
233
S
NS2A
NS2A:
V
127
I
NS3
NS3:
E
43
D
NS3:
T
112
M
NS3:
V
462
I
NS3:
T
476
M
NS4A
NS4A:
D
36
H
NS4A:
V
100
I
NS5
NS5:
R
47
K
NS5:
V
72
I
NS5:
A
372
V
NS5:
E
429
D
NS5:
I
553
T
NS5:
Q
562
L
NS5:
T
629
S
NS5:
L
639
P
NS5:
E
820
D
NS5:
V
830
I
prM
prM:
R
11
H
Deletions
None
Insertions
None
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