GS_00EAVEB.1

Display Name: India/GS_00EAVEB.1/2024-09-13
P. Singh, S. Negi, K. Sharma, R. Khare & A. Bhargava

Submission details

Submission ID
PV554922.1
Submitting group
Date submitted
2025-07-07 07:55:25 UTC
Date released
2025-07-07 10:41:07 UTC

Authors

Author affiliations
Department of Microbiology, All India Institute of Medical Sciences, State Virus Research and Diagnostic Laboratory (VRDL)

Clade & Lineage

Clade
3III_A

Alignment states and QC metrics

Completeness
98.63%
Length
10561
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
1
Total SNPs
184
Total unknown nucs
0

Sample details

Collection country
India
Collection date
2024-09-13
Isolate name
AIIMSR-DEN-65/2024

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2025-04-29
NCBI update date
2025-04-29

Nucleotide mutations

Mutations called relative to the NC_001475.2 reference

Substitutions

  • G65A
  • G112A
  • C203T
  • C334T
  • C343T
  • C358T
  • C383A
  • T406C
  • T496A
  • T556C
  • G565A
  • A1264G
  • G1300T
  • A1306G
  • G1321A
  • G1349A
  • G1384A
  • A1402G
    • Deletions
    None
    Insertions
    ins_10436:A

    Amino acid mutations

    Mutations called relative to the NC_001475.2 reference

    Substitutions

    2K

  • 2K:L17M
  • 2K:T20I

    • C

  • C:Q97K

    • E

  • E:V139I
  • E:V158I
  • E:E404A

    • NS1

  • NS1:L178M
  • NS1:T233S

    • NS3

  • NS3:F31L
  • NS3:E43D
  • NS3:T176A

    • NS4A

  • NS4A:D36H
  • NS4A:V100I

    • NS5

  • NS5:I553T
  • NS5:Q562L
  • NS5:L603V
  • NS5:E820D
  • NS5:V830I
    • Deletions
    None
    Insertions
    None