Display Name: India/GS_00EAQ50.1/2024-08-17
D. Tina, C. N. Varun, T. Surbhi, S. Chandel, N. Siddalingaiah, P. Kumar, L. Lodha, U. Shruthi, C. Pattabiraman & R. S. Mani

Submission details

Submission ID
PQ795769.1
Date submitted
2025-07-07 07:55:25 UTC
Date released
2025-07-07 10:34:56 UTC

Authors

Author affiliations
NIMHANS, Neurovirology

Clade & Lineage

Clade
3III_B.3

Alignment states and QC metrics

Completeness
99.58%
Length
10662
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
1
Total SNPs
449
Total unknown nucs
0

Sample details

Collection country
India
Collection date
2024-08-17
Isolate name
NIMH-2354_Z4_2024-08-17

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2024-12-26
NCBI update date
2024-12-26

Nucleotide mutations

Mutations called relative to the NC_001475.2 reference

Substitutions

  • G65A
  • C203T
  • T235C
  • T250C
  • C256T
  • A265G
  • C289T
  • T295C
  • G322T
  • C334T
  • C358T
  • C383A
  • C469G
  • T496G
  • T511C
  • T556C
  • G565A
  • T646C
  • Deletions
    75
    Insertions
    ins_10436:A

    Amino acid mutations

    Mutations called relative to the NC_001475.2 reference

    Substitutions

    2K

  • 2K:L17M
  • 2K:T20I
  • C

  • C:Q97K
  • E

  • E:V158I
  • E:A219T
  • E:T228I
  • E:I380T
  • E:E404A
  • NS1

  • NS1:I71V
  • NS1:L94I
  • NS1:E110D
  • NS1:L178M
  • NS1:T233S
  • NS1:S290N
  • NS2A

  • NS2A:L23M
  • NS2A:F38L
  • NS2A:V127I
  • NS2A:V150I
  • NS2B

  • NS2B:P57A
  • NS3

  • NS3:F31L
  • NS3:E43D
  • NS3:T112M
  • NS3:D392E
  • NS4A

  • NS4A:D36H
  • NS4A:V100I
  • NS4B

  • NS4B:I115V
  • NS4B:M151I
  • NS4B:S157P
  • NS4B:F160Y
  • NS5

  • NS5:V72I
  • NS5:T188A
  • NS5:V234I
  • NS5:A372V
  • NS5:E429D
  • NS5:H547L
  • NS5:I553T
  • NS5:Q562L
  • NS5:L603V
  • NS5:T629S
  • NS5:L639P
  • NS5:E820D
  • NS5:V830I
  • Deletions
    None
    Insertions
    None