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GS_00EAN44.1
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Display Name: USA/GS_00EAN44.1/2024-09-21
J. M. Garrigues &
N. M. Green
Submission details
Submission ID
PQ565653.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-07-07 07:55:25 UTC
Date released
2025-07-07 10:34:56 UTC
Authors
Author affiliations
Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories
Clade & Lineage
Clade
3III_B.3.2
Alignment states and QC metrics
Completeness
98.76%
Length
10591
Total ambiguous nucs
16
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
1
Total SNPs
448
Total unknown nucs
1
Sample details
Collection country
USA
Collection subdivision level 1
California
Collection date
2024-09-21
Isolate name
hDenV3/USA/CA-LACPHL-DA00029/2024
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PQ565653.1
NCBI release date
2024-11-11
NCBI update date
2024-11-11
Nucleotide mutations
Mutations called relative to the
NC_001475.2
reference
Substitutions
G
65
A
C
203
T
T
235
C
T
250
C
C
256
T
A
265
G
C
289
T
T
295
C
G
322
T
C
334
T
C
358
T
C
383
A
A
451
G
C
469
G
T
496
G
T
556
C
G
565
A
C
676
T
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Deletions
75
Insertions
ins_10436:A
Amino acid mutations
Mutations called relative to the
NC_001475.2
reference
Substitutions
2K
2K:
L
17
M
2K:
T
20
I
C
C:
Q
97
K
E
E:
V
158
I
E:
A
219
T
E:
I
380
T
E:
E
404
A
NS1
NS1:
I
71
V
NS1:
L
94
I
NS1:
L
178
M
NS1:
T
233
S
NS1:
S
290
N
NS2A
NS2A:
A
16
T
NS2A:
L
23
M
NS2A:
F
38
L
NS2A:
V
127
I
NS2A:
V
150
I
NS2A:
M
186
L
NS2B
NS2B:
P
57
A
NS3
NS3:
F
31
L
NS3:
E
43
D
NS3:
T
112
M
NS3:
T
176
M
NS3:
D
392
E
NS4A
NS4A:
D
36
H
NS4A:
V
100
I
NS4B
NS4B:
I
115
V
NS4B:
M
151
I
NS4B:
S
157
P
NS4B:
F
160
Y
NS5
NS5:
V
72
I
NS5:
T
188
A
NS5:
V
234
I
NS5:
A
372
V
NS5:
E
429
D
NS5:
I
553
T
NS5:
Q
562
L
NS5:
L
603
V
NS5:
T
629
S
NS5:
L
639
P
NS5:
E
820
D
NS5:
V
830
I
NS5:
P
864
S
Deletions
None
Insertions
None
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