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GS_00E327Y.1
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Display Name: Indonesia/GS_00E327Y.1/2025-01-06
D. Lokida,
H. Kosasih &
G. Salim
Submission details
Submission ID
PV662994.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-07-07 07:51:38 UTC
Date released
2025-07-07 14:18:19 UTC
Authors
Author affiliations
RSUD Kabupaten Tangerang, Laboratorium Infeksi
Clade & Lineage
Clade
1I_K.2
Alignment states and QC metrics
Completeness
13.82%
Length
1485
Total ambiguous nucs
1
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
118
Total unknown nucs
0
Sample details
Collection country
Indonesia
Collection subdivision level 1
Banten,Tangerang
Collection date
2025-01-06
Isolate name
DENV1/INA/2024/TNG6121034
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PV662994.1
NCBI release date
2025-05-26
NCBI update date
2025-05-26
Nucleotide mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
G
940
A
A
957
G
A
961
G
T
988
A
G
991
T
G
997
A
A
1006
G
C
1007
T
G
1009
A
G
1012
A
C
1055
T
G
1081
A
T
1147
C
G
1150
A
G
1177
A
G
1192
A
A
1196
G
C
1222
T
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Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
E
E:
N
8
S
E:
T
88
A
E:
T
155
S
E:
S
171
T
E:
K
203
E
E:
I
293
T
E:
V
324
I
E:
S
339
T
E:
I
357
T
E:
V
380
I
E:
I
436
V
E:
I
461
V
E:
M
484
L
Deletions
None
Insertions
None
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