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GS_00E3244.1
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Display Name: China/GS_00E3244.1/2024-12-13
Y. Feng,
H. Zhong,
M. Jiang &
W. Li
Submission details
Submission ID
PV571663.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-07-07 07:51:38 UTC
Date released
2025-07-07 14:18:19 UTC
Authors
Author affiliations
Sichuan Center for Disease Control and Prevention, Institute of Microbiological Detection and Analyses
Clade & Lineage
Clade
1IV_B.1
Alignment states and QC metrics
Completeness
97.72%
Length
10504
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
403
Total unknown nucs
14
Sample details
Collection country
China
Collection subdivision level 1
Sichuan
Collection date
2024-12-13
Isolate name
SCDen24-93
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PV571663.1
NCBI release date
2025-05-03
NCBI update date
2025-05-03
Nucleotide mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
T
203
A
G
302
A
A
355
G
G
433
A
C
439
T
C
451
T
A
454
G
G
457
A
A
473
G
C
517
A
G
521
A
C
538
T
C
599
A
A
616
G
C
719
T
T
742
C
C
781
T
A
789
G
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Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
C
C:
L
37
M
C:
G
70
S
E
E:
F
96
L
E:
K
203
E
E:
I
293
T
E:
M
297
V
E:
S
338
T
E:
I
378
L
NS1
NS1:
S
94
N
NS1:
I
123
V
NS1:
G
125
E
NS1:
T
131
S
NS1:
N
146
D
NS1:
A
213
T
NS1:
F
217
L
NS1:
D
278
G
NS1:
T
307
I
NS2A
NS2A:
T
44
I
NS2A:
K
67
T
NS2A:
N
118
S
NS2A:
M
133
I
NS2A:
T
148
A
NS2B
NS2B:
A
56
T
NS3
NS3:
R
33
K
NS3:
A
91
T
NS3:
T
115
I
NS3:
V
123
I
NS3:
A
293
S
NS3:
D
350
E
NS3:
V
384
I
NS3:
S
517
N
NS4A
NS4A:
I
110
V
NS4B
NS4B:
A
18
V
NS4B:
N
22
S
NS5
NS5:
T
135
I
NS5:
I
181
V
NS5:
S
629
L
NS5:
A
639
G
NS5:
E
640
K
NS5:
K
647
E
NS5:
H
649
Y
NS5:
T
651
I
NS5:
F
881
Y
prM
prM:
I
13
V
prM:
A
29
T
prM:
K
118
R
prM:
V
135
L
Deletions
None
Insertions
None
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