GS_00E31CP.1

Display Name: India/GS_00E31CP.1/2024-09-13
P. Singh, S. Negi, K. Sharma, R. Khare & A. Bhargava

Submission details

Submission ID
PV554923.1
Submitting group
Date submitted
2025-07-07 07:51:38 UTC
Date released
2025-07-07 14:18:19 UTC

Authors

Author affiliations
Department of Microbiology, All India Institute of Medical Sciences, State Virus Research and Diagnostic Laboratory (VRDL)

Clade & Lineage

Clade
1III_A

Alignment states and QC metrics

Completeness
97.87%
Length
10506
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
492
Total unknown nucs
0

Sample details

Collection country
India
Collection date
2024-09-13
Isolate name
AIIMSR-DEN-66/2024

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2025-04-29
NCBI update date
2025-04-29

Nucleotide mutations

Mutations called relative to the NC_001477.1 reference

Substitutions

  • T171G
  • T208C
  • C214T
  • T230A
  • T244C
  • T274C
  • G302A
  • G349A
  • A355G
  • A363G
  • T368C
  • G388A
  • T397C
  • T442C
  • C443T
  • C451A
  • G466A
  • G480C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_001477.1 reference

    Substitutions

    C

  • C:V26G
  • C:L46M
  • C:G70S
  • C:N90S

    • E

  • E:F96V
  • E:I114L
  • E:T161I
  • E:K203E
  • E:I293T
  • E:M297V
  • E:F337I
  • E:S339T
  • E:A369T
  • E:V380I
  • E:I439V
  • E:V491A

    • NS1

  • NS1:V178M
  • NS1:K227R
  • NS1:D278N
  • NS1:T307I
  • NS1:K324R
  • NS1:K347R

    • NS2A

  • NS2A:R82K

    • NS2B

  • NS2B:K55R

    • NS3

  • NS3:R185K
  • NS3:V221I
  • NS3:V452A

    • NS4A

  • NS4A:Q19L
  • NS4A:R76K
  • NS4A:I89M
  • NS4A:A93V

    • NS4B

  • NS4B:H23Y
  • NS4B:A27T
  • NS4B:K212R

    • NS5

  • NS5:I34M
  • NS5:L123I
  • NS5:K248R
  • NS5:V270I
  • NS5:R378N
  • NS5:I669T

    • prM

  • prM:S15T
  • prM:V31I
  • prM:T59A
  • prM:E72D
    • Deletions
    None
    Insertions
    None