GS_00E30TT.1

Display Name: China/GS_00E30TT.1/2024-08-13
l. Yuan

Submission details

Submission ID
PV544569.1
Submitting group
Date submitted
2025-07-07 07:51:38 UTC
Date released
2025-07-07 14:18:19 UTC

Authors

Author affiliations
kunming university of science and technology, faculty of life science and technology

Clade & Lineage

Clade
1I_K.1.1

Alignment states and QC metrics

Completeness
13.83%
Length
1485
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
118
Total unknown nucs
0

Sample details

Collection country
China
Collection subdivision level 1
Mengla,Yunnan
Collection date
2024-08-13
Isolate name
ML34-2

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2025-04-24
NCBI update date
2025-04-24

Nucleotide mutations

Mutations called relative to the NC_001477.1 reference

Substitutions

  • G940A
  • A957G
  • T988A
  • G991T
  • G997A
  • A1006G
  • C1007T
  • G1012A
  • C1045T
  • C1055T
  • G1081A
  • A1088G
  • C1114T
  • C1144T
  • T1147C
  • G1150A
  • G1177A
  • C1178T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_001477.1 reference

    Substitutions

    E

  • E:N8S
  • E:N52D
  • E:T88A
  • E:T155S
  • E:S171T
  • E:K203E
  • E:S225A
  • E:I293T
  • E:V324I
  • E:S339T
  • E:D360V
  • E:V380I
  • E:I436V
  • E:I461V
  • E:M484L
    • Deletions
    None
    Insertions
    None