GS_00E2UQ7.1

Display Name: USA/GS_00E2UQ7.1/2024-11-12
E. B. Fox, J. M. Garrigues & N. M. Green

Submission details

Submission ID
PQ868290.1
Submitting group
Date submitted
2025-07-07 07:51:38 UTC
Date released
2025-07-07 14:12:30 UTC

Authors

Author affiliations
Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories

Clade & Lineage

Clade
1IV_B.1

Alignment states and QC metrics

Completeness
98.35%
Length
10575
Total ambiguous nucs
17
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
377
Total unknown nucs
0

Sample details

Collection country
USA
Collection subdivision level 1
California
Collection date
2024-11-12
Isolate name
hDenV1/USA/CA-LACPHL-DA00043/2024

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2025-01-18
NCBI update date
2025-01-18

Nucleotide mutations

Mutations called relative to the NC_001477.1 reference

Substitutions

  • G302A
  • T343A
  • C346T
  • A355G
  • G433A
  • C439T
  • T442C
  • C451T
  • A454G
  • G457A
  • C522T
  • C538T
  • C599A
  • A616G
  • A691G
  • C719T
  • T742C
  • C781T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_001477.1 reference

    Substitutions

    C

  • C:G70S

    • E

  • E:F96L
  • E:K203E
  • E:I293T
  • E:M297V
  • E:I378L

    • NS1

  • NS1:S94N
  • NS1:I123V
  • NS1:T131S
  • NS1:N146D
  • NS1:A213T
  • NS1:I224V
  • NS1:D278G
  • NS1:T307I

    • NS2A

  • NS2A:T44I
  • NS2A:M86T
  • NS2A:T148A

    • NS3

  • NS3:E12K
  • NS3:R15K
  • NS3:R33K
  • NS3:A91T
  • NS3:V323M
  • NS3:V332T
  • NS3:N379S

    • NS4A

  • NS4A:I89M

    • NS4B

  • NS4B:A18V
  • NS4B:N22S

    • NS5

  • NS5:I181V
  • NS5:S629L
  • NS5:K647E
  • NS5:H649Y
  • NS5:T651I
  • NS5:F881Y

    • prM

  • prM:A29V
  • prM:K118R
  • prM:K122R
    • Deletions
    None
    Insertions
    None