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GS_00DLFAD.1
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Display Name: China/GS_00DLFAD.1/2024-09-26
S. Li
Submission details
Submission ID
PV789651.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-07-07 07:49:50 UTC
Date released
2025-07-07 08:19:52 UTC
Authors
Author affiliations
Institute of Medical Biology, Chinese Academy of Medical Sciences, Institute of Medical Biology
Clade & Lineage
Clade
4I_A.3
Alignment states and QC metrics
Completeness
100.00%
Length
10662
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
14
Total SNPs
868
Total unknown nucs
0
Sample details
Collection country
China
Collection subdivision level 1
Yunnan,Xishuangbanna
Collection date
2024-09-26
Isolate name
KM24DFY
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PV789651.1
NCBI release date
2025-06-21
NCBI update date
2025-06-21
Nucleotide mutations
Mutations called relative to the
NC_002640.1
reference
Substitutions
G
77
A
A
78
G
T
124
C
A
170
G
T
176
C
A
200
G
C
203
T
T
215
C
C
240
T
A
242
G
C
261
A
C
266
T
G
299
A
G
314
A
T
323
C
C
332
A
G
341
A
T
343
C
Show more
Deletions
10375
Insertions
ins_10607:GGAGGCACAG, ins_0:A, ins_10466:A, ins_10287:AG
Amino acid mutations
Mutations called relative to the
NC_002640.1
reference
Substitutions
2K
2K:
G
19
A
2K:
I
21
V
C
C:
V
8
A
C:
I
81
T
E
E:
T
46
I
E:
V
96
M
E:
M
163
T
E:
K
203
T
E:
S
227
L
E:
Y
233
H
E:
A
329
T
E:
L
357
F
E:
N
384
E
E:
F
429
L
E:
I
455
V
E:
F
461
L
E:
T
478
S
E:
Q
494
H
NS1
NS1:
V
5
A
NS1:
A
6
V
NS1:
V
22
I
NS1:
T
98
S
NS1:
T
105
A
NS1:
S
109
N
NS1:
A
128
T
NS1:
I
135
V
NS1:
S
152
F
NS1:
L
153
F
NS1:
K
206
R
NS1:
E
213
D
NS1:
K
214
R
NS1:
S
246
A
NS1:
F
251
V
NS1:
V
265
L
NS1:
I
287
V
NS1:
S
339
N
NS1:
T
351
S
NS2A
NS2A:
S
5
P
NS2A:
I
38
T
NS2A:
I
68
M
NS2A:
V
90
I
NS2A:
L
122
F
NS2A:
I
135
M
NS2A:
Q
138
H
NS2A:
R
155
K
NS2A:
V
161
I
NS2A:
R
217
K
NS2B
NS2B:
V
74
I
NS3
NS3:
T
13
A
NS3:
K
14
Q
NS3:
A
17
T
NS3:
S
19
T
NS3:
F
31
L
NS3:
I
40
V
NS3:
M
42
T
NS3:
T
62
S
NS3:
A
321
T
NS3:
P
435
T
NS3:
K
480
R
NS3:
E
558
K
NS3:
R
594
K
NS4A
NS4A:
R
39
K
NS4A:
T
87
A
NS4B
NS4B:
R
83
K
NS5
NS5:
K
42
R
NS5:
A
44
G
NS5:
I
51
T
NS5:
H
53
Y
NS5:
S
59
T
NS5:
K
200
R
NS5:
N
204
S
NS5:
A
224
V
NS5:
V
256
A
NS5:
T
269
I
NS5:
Y
294
H
NS5:
Q
296
H
NS5:
I
335
V
NS5:
M
372
V
NS5:
K
387
R
NS5:
E
521
D
NS5:
Q
548
L
NS5:
R
586
K
Show more
prM
prM:
S
2
H
prM:
T
73
A
prM:
V
156
I
Deletions
None
Insertions
None
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