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GS_00DLAMV.1
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USA/GS_00DLAMV.1/2024-09-03
M. Mitchell,
O. Tekin &
Y. Dong
FLDOH, BPHL
Submission details
Submission ID
PQ617138.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-07-07 07:49:50 UTC
Date released
2025-07-07 08:19:52 UTC
INSDC
bioprojectAccession
PRJNA973096
biosampleAccession
SAMN44818338
INSDC accession
PQ617138.1
NCBI release date
2024-11-24
NCBI update date
2024-11-24
SRA run accession
SRR31395601
Clade & Lineage
Clade
4II_B.1.2
Sample details
Collection country
USA
Collection subdivision level 1
FL
Collection date
2024-09-03
Isolate name
DENV-4/USA/FL-BPHL-0157/2024
Host
Host
Homo sapiens
Alignment and QC
Length
10309 (95.5%)
Total inserted nucs
1
Total SNPs
341
Total unknown nucs
134
Nucleotide mutations
Mutations called relative to the
NC_002640.1
reference
Substitutions
C
452
A
G
496
A
G
497
A
G
502
A
G
518
A
G
530
A
T
584
C
C
606
T
G
674
A
A
694
G
G
698
T
A
809
G
C
839
T
G
842
A
A
884
G
C
902
T
G
914
A
C
926
T
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Deletions
N/A
Insertions
ins_10466:A
Amino acid substitutions
Substitutions called relative to the
NC_002640.1
reference
Substitutions
E
E:
V
6
I
E:
S
64
L
E:
M
163
T
E:
A
222
T
E:
I
351
V
E:
S
354
A
NS1
NS1:
A
6
V
NS1:
K
11
R
NS1:
T
105
I
NS1:
V
108
A
NS1:
L
153
F
NS1:
I
212
M
NS1:
K
214
R
NS1:
S
239
T
NS1:
D
290
N
NS2A
NS2A:
Q
2
P
NS2A:
V
35
A
NS2A:
V
112
T
NS2A:
S
114
A
NS2A:
V
144
L
NS2A:
P
159
S
NS2B
NS2B:
I
67
V
NS2B:
V
74
I
NS3
NS3:
K
14
Q
NS3:
P
435
T
NS3:
E
558
K
NS3:
R
594
K
NS4B
NS4B:
V
18
A
NS4B:
V
71
I
NS4B:
M
84
V
NS5
NS5:
D
47
E
NS5:
K
175
N
NS5:
H
247
Y
NS5:
K
649
R
NS5:
I
692
V
NS5:
T
826
I
NS5:
H
832
Q
NS5:
S
856
A
prM
prM:
R
19
K
prM:
R
21
K
prM:
E
85
G
prM:
M
158
I
Deletions
N/A
Insertions
N/A
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