GS_00DLA20.1

Display Name: Malaysia/GS_00DLA20.1/2023-09-01
F. M. Djamil, H. L. Pun, X. R. Lim, C. Y. Yu & H. Y. Chee

Submission details

Submission ID
PQ555702.1
Submitting group
Date submitted
2025-07-07 07:49:50 UTC
Date released
2025-07-07 08:19:52 UTC

Authors

Author affiliations
Universiti Putra Malaysia, Department of Medical Microbiology

Clade & Lineage

Clade
4II_B

Alignment states and QC metrics

Completeness
100.00%
Length
10649
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
336
Total unknown nucs
0

Sample details

Collection country
Malaysia
Collection subdivision level 1
Negeri Sembilan
Collection date
2023-09-01
Isolate name
D4/Malaysia/110454/23

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2024-11-09
NCBI update date
2024-11-09

Nucleotide mutations

Mutations called relative to the NC_002640.1 reference

Substitutions

  • T212C
  • T215C
  • C266T
  • A278G
  • G299A
  • G314A
  • G317A
  • A320G
  • G527A
  • G530A
  • T545C
  • C554T
  • T593C
  • C599T
  • C602T
  • C606T
  • C611T
  • T614C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_002640.1 reference

    Substitutions

    2K

  • 2K:I21V

    • E

  • E:S120L
  • E:L357F
  • E:N384D

    • NS1

  • NS1:A6V
  • NS1:S9N
  • NS1:H50Y
  • NS1:S109N
  • NS1:S131N
  • NS1:P144S
  • NS1:S152F
  • NS1:L153F
  • NS1:K245R
  • NS1:V265A

    • NS2A

  • NS2A:L113F

    • NS3

  • NS3:L30F
  • NS3:R142K
  • NS3:S292C
  • NS3:A321S
  • NS3:T322I
  • NS3:E558K
  • NS3:R594K

    • NS4A

  • NS4A:S12T
  • NS4A:R20K
  • NS4A:R36K

    • NS4B

  • NS4B:M93I
  • NS4B:A175V

    • NS5

  • NS5:T235I
  • NS5:K249R
  • NS5:I276V
  • NS5:Q285R
  • NS5:I335V
  • NS5:V373I
  • NS5:S429N
  • NS5:G499S
  • NS5:E521D
  • NS5:M530I
    • Deletions
    None
    Insertions
    None