GS_00DL9Z6.1

Display Name: USA/GS_00DL9Z6.1/2024-07-29
M. Mitchell, O. Tekin & Y. Dong

Submission details

Submission ID
PQ527048.1
Submitting group
Date submitted
2025-07-07 07:49:50 UTC
Date released
2025-07-07 08:19:21 UTC

Authors

Author affiliations
FLDOH, BPHL

INSDC

Bioproject accession
Biosample accession
INSDC accession
NCBI release date
2024-11-03
NCBI update date
2024-11-03
SRA run accession

Clade & Lineage

Clade
4II_B.1.2

Alignment states and QC metrics

Completeness
94.81%
Length
10096
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
332
Total unknown nucs
0

Sample details

Collection country
USA
Collection subdivision level 1
FL
Collection date
2024-07-29
Isolate name
DENV-4/USA/FL-BPHL-0123/2024

Host

Host name scientific
Homo sapiens
Host taxon id

Nucleotide mutations

Mutations called relative to the NC_002640.1 reference

Substitutions

  • G496A
  • G502A
  • T584C
  • C606T
  • G698C
  • T800C
  • A809G
  • C839T
  • G842A
  • G848A
  • A884G
  • T971C
  • A1022G
  • C1043T
  • A1052G
  • A1055G
  • T1076C
  • C1129T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_002640.1 reference

    Substitutions

    E

  • E:S64L
  • E:M163T
  • E:K174E
  • E:A222T
  • E:I351V
  • E:S354A
  • E:I380V

    • NS1

  • NS1:A6V
  • NS1:K11R
  • NS1:V22A
  • NS1:T105I
  • NS1:V108A
  • NS1:L153F
  • NS1:K214R
  • NS1:S239T
  • NS1:D290N

    • NS2A

  • NS2A:Q2P
  • NS2A:V35A
  • NS2A:V112T
  • NS2A:S114A
  • NS2A:V144L
  • NS2A:P159S

    • NS2B

  • NS2B:V74I

    • NS3

  • NS3:K14Q
  • NS3:P435T
  • NS3:E558K
  • NS3:R594K

    • NS4B

  • NS4B:V18A
  • NS4B:M84V

    • NS5

  • NS5:D47E
  • NS5:K175N
  • NS5:H247Y
  • NS5:K649R
  • NS5:I692V
  • NS5:T786I
  • NS5:T791I
  • NS5:T826I
  • NS5:H832Q
  • NS5:S856A

    • prM

  • prM:R19K
  • prM:R21K
    • Deletions
    None
    Insertions
    None