GenSpectrum
Dengue 4
Influenza B/Victoria
Dengue 1
Dengue 2
Dengue 3
Dengue 4
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
RSV-A
RSV B
Browse
GenSpectrum
Browse
Docs
API docs
GS_00DL9XA.1
Download
Download FASTA
Download metadata TSV
Display Name: Indonesia/GS_00DL9XA.1/2023-05-15
W. Su,
W. Lu &
P. Liu
Submission details
Submission ID
PQ357326.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-07-07 07:49:50 UTC
Date released
2025-07-07 08:19:21 UTC
Authors
Author affiliations
Guangzhou Center for Disease Control and Prevention, Derpartment of Virology
Clade & Lineage
Clade
4II_A
Alignment states and QC metrics
Completeness
100.00%
Length
10652
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
4
Total SNPs
655
Total unknown nucs
0
Sample details
Collection country
Indonesia
Collection date
2023-05-15
Isolate name
23GZ08185_D4_IDN
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PQ357326.1
NCBI release date
2024-09-26
NCBI update date
2024-09-26
Nucleotide mutations
Mutations called relative to the
NC_002640.1
reference
Substitutions
G
77
T
T
212
C
T
215
C
T
257
C
A
278
G
G
299
A
G
311
A
A
320
G
C
365
T
C
372
T
G
374
A
C
386
T
G
387
A
G
389
A
A
394
G
G
404
A
A
407
G
C
419
T
Show more
Deletions
10374
Insertions
ins_79:A, ins_10466:A, ins_10288:GA
Amino acid mutations
Mutations called relative to the
NC_002640.1
reference
Substitutions
C
C:
G
96
R
C:
K
98
R
C:
I
102
M
E
E:
S
120
L
E:
M
163
T
E:
L
357
F
E:
N
384
D
E:
I
455
V
NS1
NS1:
A
6
V
NS1:
S
9
N
NS1:
N
24
S
NS1:
H
50
Y
NS1:
V
88
I
NS1:
S
109
N
NS1:
P
144
S
NS1:
S
152
F
NS1:
K
245
R
NS1:
V
265
M
NS1:
D
290
N
NS2A
NS2A:
V
27
I
NS2A:
V
37
I
NS2A:
L
40
F
NS2A:
L
113
F
NS2A:
Q
138
H
NS2A:
M
158
I
NS2A:
L
171
F
NS2A:
S
183
T
NS2A:
C
184
R
NS2B
NS2B:
V
74
I
NS2B:
T
119
A
NS2B:
M
123
I
NS3
NS3:
K
14
Q
NS3:
A
17
T
NS3:
R
142
K
NS3:
S
292
C
NS3:
T
322
I
NS3:
K
381
R
NS3:
P
435
T
NS3:
V
473
I
NS3:
E
558
K
NS3:
R
594
K
NS4A
NS4A:
R
36
K
NS4A:
I
78
M
NS4A:
T
87
S
NS4B
NS4B:
A
175
V
NS4B:
F
187
L
NS4B:
L
199
M
NS5
NS5:
K
46
R
NS5:
V
71
I
NS5:
K
200
R
NS5:
H
201
Y
NS5:
N
204
S
NS5:
T
235
I
NS5:
T
245
I
NS5:
V
373
I
NS5:
N
390
S
NS5:
T
420
A
NS5:
G
499
S
NS5:
E
521
D
NS5:
M
530
I
NS5:
Q
548
L
NS5:
I
563
T
NS5:
R
586
K
NS5:
K
646
R
NS5:
G
676
S
NS5:
T
786
A
NS5:
H
801
Q
prM
prM:
S
2
H
Deletions
None
Insertions
None
Load sequences