GS_00DL96T.1

Display Name: Panama/GS_00DL96T.1/2023-12-01
M. Chen-German, D. Arauz, C. Aguilar, M. Vega, C. Gonzalez, J. Gondola, L. Moreno, L. Cerezo, L. Franco, J. Mendez-Rico, J. M. Pascale, S. Lopez-Verges, A. A. Martinez, B. Moreno, A. Martinez, O. Chavarria & A. Moreno

Submission details

Submission ID
PQ014893.1
Submitting group
Date submitted
2025-07-07 07:49:50 UTC
Date released
2025-07-07 08:19:21 UTC

Authors

Author affiliations
Gorgas Memorial Institute for Health Studies, Virology and Biotechnology Research

Clade & Lineage

Clade
4II_B.2

Alignment states and QC metrics

Completeness
93.85%
Length
10197
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
340
Total unknown nucs
203

Sample details

Collection country
Panama
Collection subdivision level 1
Panama
Collection date
2023-12-01
Isolate name
DENV4-A000757

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2024-10-29
NCBI update date
2024-10-29

Nucleotide mutations

Mutations called relative to the NC_002640.1 reference

Substitutions

  • A224G
  • G451C
  • C452A
  • G497A
  • T551C
  • T593C
  • C603T
  • T614C
  • G674A
  • C689T
  • C839T
  • A854G
  • T866C
  • C887T
  • C1028T
  • G1148A
  • G1196A
  • T1211C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_002640.1 reference

    Substitutions

    E

  • E:M163T
  • E:E172G
  • E:K174N
  • E:Y233H
  • E:I351V

    • NS1

  • NS1:A6V
  • NS1:S141T
  • NS1:S152F
  • NS1:V178M
  • NS1:I287V

    • NS2A

  • NS2A:V35A
  • NS2A:T49S
  • NS2A:S65F
  • NS2A:I72T
  • NS2A:V79A
  • NS2A:V112T
  • NS2A:P159S
  • NS2A:Q188H
  • NS2A:V192I

    • NS2B

  • NS2B:V74I
  • NS2B:I95V
  • NS2B:V116L

    • NS3

  • NS3:K14Q
  • NS3:K213R
  • NS3:P435T
  • NS3:E558K

    • NS4A

  • NS4A:V58I
  • NS4A:I78M
  • NS4A:L94M

    • NS4B

  • NS4B:F13L
  • NS4B:T56A

    • NS5

  • NS5:R246K
  • NS5:T314A
  • NS5:Q548K
  • NS5:K649R
  • NS5:V653I
  • NS5:G676S
  • NS5:T826V
  • NS5:I837V
    • Deletions
    None
    Insertions
    None