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GS_00DL8MX.1
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Display Name: Thailand/GS_00DL8MX.1/2024-01-14
L. Meephaendee,
S. Naemkhunthot,
A. Posanacharoen,
A. Rojanawiwat,
P. Roychoudhury,
J. Sereewit,
E. B. Sobolik &
A. L. Greninger
Submission details
Submission ID
PP586203.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-07-07 07:49:50 UTC
Date released
2025-07-07 08:19:21 UTC
Authors
Author affiliations
University of Washington, Virology
Clade & Lineage
Clade
4I_A.3
Alignment states and QC metrics
Completeness
99.99%
Length
10651
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
5
Total SNPs
875
Total unknown nucs
0
Sample details
Collection country
Thailand
Collection date
2024-01-14
Isolate name
DG08
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PP586203.1
NCBI release date
2024-10-11
NCBI update date
2024-10-11
Nucleotide mutations
Mutations called relative to the
NC_002640.1
reference
Substitutions
G
77
A
A
78
G
T
124
C
A
170
G
A
200
G
C
203
T
T
215
C
C
240
T
A
242
G
C
261
A
A
263
G
C
266
T
G
299
A
G
314
A
T
323
C
C
332
A
G
341
A
T
343
C
Show more
Deletions
10276, 10375
Insertions
ins_10466:AA, ins_10287:AG, ins_20:A
Amino acid mutations
Mutations called relative to the
NC_002640.1
reference
Substitutions
2K
2K:
G
19
A
2K:
I
21
V
C
C:
V
8
A
C:
I
81
T
E
E:
T
46
I
E:
V
96
M
E:
S
122
L
E:
V
140
A
E:
M
163
T
E:
K
203
T
E:
S
227
L
E:
Y
233
H
E:
A
329
T
E:
L
357
F
E:
N
384
E
E:
I
455
V
E:
F
461
L
E:
T
478
S
E:
A
481
V
E:
Q
494
H
NS1
NS1:
V
5
A
NS1:
A
6
V
NS1:
V
22
I
NS1:
T
98
S
NS1:
T
105
A
NS1:
S
109
N
NS1:
A
128
T
NS1:
I
135
V
NS1:
D
139
E
NS1:
S
152
F
NS1:
L
153
F
NS1:
K
214
R
NS1:
S
246
A
NS1:
F
251
V
NS1:
V
265
L
NS1:
I
287
M
NS1:
S
339
N
NS1:
T
351
S
NS2A
NS2A:
I
38
T
NS2A:
I
68
M
NS2A:
V
90
I
NS2A:
M
103
I
NS2A:
L
122
F
NS2A:
I
135
M
NS2A:
Q
138
H
NS2A:
R
155
K
NS2A:
R
217
K
NS2B
NS2B:
V
74
I
NS2B:
T
119
A
NS3
NS3:
T
13
A
NS3:
K
14
Q
NS3:
A
17
T
NS3:
S
19
T
NS3:
F
31
L
NS3:
I
40
V
NS3:
M
42
T
NS3:
T
62
S
NS3:
A
321
T
NS3:
P
331
S
NS3:
P
435
T
NS3:
K
480
R
NS3:
E
558
K
NS3:
R
594
K
NS4A
NS4A:
R
39
K
NS4A:
T
87
A
NS4B
NS4B:
R
83
K
NS4B:
M
93
I
NS5
NS5:
K
42
R
NS5:
I
51
T
NS5:
H
53
Y
NS5:
S
59
T
NS5:
K
125
R
NS5:
K
200
R
NS5:
N
204
S
NS5:
A
224
V
NS5:
V
256
A
NS5:
Q
296
H
NS5:
I
335
V
NS5:
M
372
V
NS5:
A
383
T
NS5:
K
387
R
NS5:
E
521
D
NS5:
M
530
I
NS5:
Q
548
L
NS5:
R
586
K
Show more
prM
prM:
S
2
H
prM:
T
73
A
prM:
V
156
T
Deletions
None
Insertions
None
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