GS_00DL7TL.1

Display Name: Singapore/GS_00DL7TL.1/2023-01-01
R. X. Lee, G. Yeo, J. Wong, L. C. Ng & H. C. Hapuarachchi

Submission details

Submission ID
PP514621.1
Submitting group
Date submitted
2025-07-07 07:49:50 UTC
Date released
2025-07-07 08:19:21 UTC

Authors

Author affiliations
National Environment Agency, Environmental Health Institute

Clade & Lineage

Clade
4II_A.1

Alignment states and QC metrics

Completeness
13.94%
Length
1485
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
82
Total unknown nucs
0

Sample details

Collection country
Singapore
Collection date
2023-01-01
Isolate name
SG(EHI)D4/5849Y23

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2024-03-26
NCBI update date
2024-03-26

Nucleotide mutations

Mutations called relative to the NC_002640.1 reference

Substitutions

  • A953G
  • A959G
  • A986G
  • C1005T
  • C1043T
  • T1076C
  • C1127T
  • A1130G
  • T1145C
  • G1184C
  • G1196A
  • C1232T
  • T1277C
  • C1297T
  • T1301C
  • T1323C
  • G1337A
  • A1352G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_002640.1 reference

    Substitutions

    E

  • E:S120L
  • E:M163T
  • E:A222T
  • E:L357F
  • E:N384D
  • E:V439I
  • E:F461L
    • Deletions
    None
    Insertions
    None