GS_00DL7H6.1

Display Name: India/GS_00DL7H6.1/2022-09-12
A. Tripathi & S. Mukherjee

Submission details

Submission ID
PP474374.1
Submitting group
Date submitted
2025-07-07 07:49:50 UTC
Date released
2025-07-07 08:19:21 UTC

Authors

Author affiliations
Calcutta School of Tropical Medicine, Biochemistry and Medical Biotechnology

Clade & Lineage

Clade
4I_B.1

Alignment states and QC metrics

Completeness
13.90%
Length
1485
Total ambiguous nucs
5
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
119
Total unknown nucs
0

Sample details

Collection country
India
Collection date
2022-09-12
Isolate name
D42291

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2024-03-18
NCBI update date
2024-03-18

Nucleotide mutations

Mutations called relative to the NC_002640.1 reference

Substitutions

  • A956G
  • A959G
  • C1004T
  • C1028T
  • C1075T
  • T1076C
  • A1085G
  • C1088T
  • G1122A
  • A1130C
  • C1139T
  • T1145C
  • T1181C
  • G1184C
  • G1196A
  • C1199T
  • T1211C
  • T1257C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_002640.1 reference

    Substitutions

    E

  • E:T46I
  • E:E62K
  • E:I132V
  • E:M163T
  • E:K200T
  • E:Y233H
  • E:K346N
  • E:I352N
  • E:L357F
  • E:N366S
  • E:E368K
  • E:N384D
  • E:F429L
  • E:I455V
  • E:T478S
    • Deletions
    None
    Insertions
    None