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GS_00DKXJG.1
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Display Name: USA/GS_00DKXJG.1/2022-11-15
S. Schmedes,
O. Tekin,
N. Tarigopula &
Y. Dong
Submission details
Submission ID
OR162320.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-07-07 07:49:50 UTC
Date released
2025-07-07 08:18:20 UTC
Authors
Author affiliations
FLDOH, BPHL
INSDC
Bioproject accession
PRJNA973096
Biosample accession
SAMN35818487
INSDC accession
OR162320.1
NCBI release date
2023-06-26
NCBI update date
2025-02-07
SRA run accession
SRR25404950
Clade & Lineage
Clade
4II_B.1.2
Alignment states and QC metrics
Completeness
98.67%
Length
10508
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
1
Total SNPs
340
Total unknown nucs
0
Sample details
Collection country
USA
Collection subdivision level 1
FL
Collection date
2022-11-15
Isolate name
DENV-4/USA/FL-BPHL-0031/2022
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Nucleotide mutations
Mutations called relative to the
NC_002640.1
reference
Substitutions
A
116
G
C
203
A
G
352
A
C
377
T
C
414
T
C
428
T
T
444
C
C
445
A
C
447
T
C
449
G
A
450
T
G
451
C
C
452
A
G
496
A
G
497
A
G
502
A
T
584
C
C
606
T
Show more
Deletions
None
Insertions
ins_10466:A
Amino acid mutations
Mutations called relative to the
NC_002640.1
reference
Substitutions
C
C:
R
84
K
E
E:
V
6
I
E:
S
64
L
E:
S
122
L
E:
M
163
T
E:
K
174
E
E:
A
222
T
E:
I
351
V
E:
S
354
A
NS1
NS1:
A
6
V
NS1:
K
11
R
NS1:
T
105
I
NS1:
V
108
A
NS1:
L
153
F
NS1:
I
212
M
NS1:
K
214
R
NS1:
S
239
T
NS1:
D
290
N
NS2A
NS2A:
Q
2
P
NS2A:
V
35
A
NS2A:
V
112
T
NS2A:
S
114
A
NS2A:
V
144
L
NS2A:
P
159
S
NS2B
NS2B:
V
74
I
NS3
NS3:
K
14
Q
NS3:
P
435
T
NS3:
E
558
K
NS3:
R
594
K
NS4B
NS4B:
V
18
A
NS4B:
V
71
I
NS4B:
M
84
V
NS5
NS5:
A
44
G
NS5:
D
47
E
NS5:
K
175
N
NS5:
H
247
Y
NS5:
K
649
R
NS5:
I
692
V
NS5:
S
748
N
NS5:
T
826
I
NS5:
H
832
Q
NS5:
S
856
A
prM
prM:
S
2
H
prM:
R
19
K
prM:
R
21
K
prM:
E
85
G
Deletions
None
Insertions
None
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