GS_00DKXHJ.1

Display Name: Indonesia/GS_00DKXHJ.1/2023-06-01
W. Su, W. Lu & Y. Cao

Submission details

Submission ID
OR136172.1
Submitting group
Date submitted
2025-07-07 07:49:50 UTC
Date released
2025-07-07 08:18:20 UTC

Authors

Author affiliations
Guangzhou Center for Disease Control and Prevention, Derpartment of Virology

Clade & Lineage

Clade
4II_A

Alignment states and QC metrics

Completeness
22.23%
Length
2368
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
1
Total SNPs
135
Total unknown nucs
0

Sample details

Collection country
Indonesia
Collection date
2023-06-01
Isolate name
23GZ08185_D4_IDN

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2023-06-20
NCBI update date
2023-06-20

Nucleotide mutations

Mutations called relative to the NC_002640.1 reference

Substitutions

  • G77T
  • T212C
  • T215C
  • T257C
  • A278G
  • G299A
  • G311A
  • A320G
  • C365T
  • C372T
  • G374A
  • C386T
  • G387A
  • G389A
  • A394G
  • G404A
  • A407G
  • C419T
    • Deletions
    None
    Insertions
    ins_79:A

    Amino acid mutations

    Mutations called relative to the NC_002640.1 reference

    Substitutions

    C

  • C:G96R
  • C:K98R
  • C:I102M

    • E

  • E:S120L
  • E:M163T
  • E:L357F
  • E:N384D
  • E:I455V

    • prM

  • prM:S2H
    • Deletions
    None
    Insertions
    None