GS_00DKTVY.1

Display Name: USA/GS_00DKTVY.1/2022-11-03
G. A. Santiago, G. Gonzalez-Morales, B. Flores, K. Charriez, J. L. Munoz-Jordan, S. Bunch, N. Cano, R. Jaber, A. Morrison, C. Panzera, J. Vergara, R. Zimler, L. Heberlein & E. Kopp

Submission details

Submission ID
OQ445967.1
Submitting group
Date submitted
2025-07-07 07:49:50 UTC
Date released
2025-07-07 08:17:50 UTC

Authors

Author affiliations
Centers for Disease Control and Prevention, Dengue Branch

Clade & Lineage

Clade
4II_B.2

Alignment states and QC metrics

Completeness
95.44%
Length
10163
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
311
Total unknown nucs
0

Sample details

Collection country
USA
Collection subdivision level 1
Florida
Collection date
2022-11-03
Isolate name
US/DB410/2022

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2023-02-21
NCBI update date
2023-02-21

Nucleotide mutations

Mutations called relative to the NC_002640.1 reference

Substitutions

  • G233A
  • G335A
  • C414T
  • C431T
  • C446A
  • T551C
  • C603T
  • T614C
  • G674A
  • C689T
  • T747C
  • A836T
  • C839T
  • A854G
  • T866C
  • C887T
  • C926G
  • C1028T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_002640.1 reference

    Substitutions

    E

  • E:M163T
  • E:E172G
  • E:K174N
  • E:Y233H
  • E:I351V

    • NS1

  • NS1:A6V
  • NS1:K11R
  • NS1:S141T
  • NS1:S152F
  • NS1:V178M
  • NS1:I287V

    • NS2A

  • NS2A:V35A
  • NS2A:T49S
  • NS2A:S65F
  • NS2A:I72T
  • NS2A:V79A
  • NS2A:V112T
  • NS2A:P159S
  • NS2A:Q188H
  • NS2A:V192I

    • NS2B

  • NS2B:V74I
  • NS2B:I95V
  • NS2B:V116L

    • NS3

  • NS3:K14Q
  • NS3:K213R
  • NS3:P435T
  • NS3:E558K

    • NS4B

  • NS4B:F13L
  • NS4B:T56A

    • NS5

  • NS5:T269I
  • NS5:T314A
  • NS5:K638R
  • NS5:K649R
  • NS5:V653I
  • NS5:T826V
  • NS5:V886A
    • Deletions
    None
    Insertions
    None